Ligand profile

CHEMBL361788

Bioactivity hit from ChEMBL on a similar protein.

Bound to: VK055_2065 — cysteine--tRNA ligase

Via homolog UniProt Q8NY00 Formula C₁₈H₁₉Br₂N₅OS
pchembl 7.89 ~12.9 nM
Mol. weight 513.26 Da
Permeability High
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL361788
UniProt (similar protein)
Q8NY00
pchembl
7.890 (~12.9 nM)
Target protein
VK055_2065

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 513.26 Da
LogP (Crippen) 4.87
H-bond donors 4
H-bond acceptors 7
TPSA 82.10 Ų
Rotatable bonds 6
Aromatic rings 3 / 4
Heavy atoms 27
Fraction sp³ C 0.33
Formula C₁₈H₁₉Br₂N₅OS

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy High

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 82.1
  • −1 ≤ LogP ≤ 5 4.87
Lipinski's Rule of Five Pass 1 violation
  • MW ≤ 500 Da 513.3
  • LogP ≤ 5 4.87
  • H-bond donors ≤ 5 4
  • H-bond acceptors ≤ 10 7
Veber's rules Pass
  • Rotatable bonds ≤ 10 6
  • TPSA ≤ 140 Ų 82.1
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
Oc1nc(NCCCNC2CCNc3c(Br)cc(Br)cc32)nc2ccsc12
InChI 
InChI=1S/C18H19Br2N5OS/c19-10-8-11-13(2-6-22-15(11)12(20)9-10)21-4-1-5-23-18-24-14-3-7-27-16(14)17(26)25-18/h3,7-9,13,21-22H,1-2,4-6H2,(H2,23,24,25,26)
InChIKey 
PELMCCPHIUBVDQ-UHFFFAOYSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Curation
pdb_similarity_tanimoto
Binding sites
PF09334

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to VK055_2065.

PDB 1

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 27

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)