Ligand profile

CHEMBL160493

Bioactivity hit from ChEMBL on a similar protein.

Bound to: VK055_3786 — peptide deformylase

Via homolog UniProt Q9JN24 Formula C₂₄H₃₇N₃O₅
pchembl 8.30 ~5.0 nM
Mol. weight 447.58 Da
Permeability Check
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL160493
UniProt (similar protein)
Q9JN24
pchembl
8.300 (~5.0 nM)
Target protein
VK055_3786

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 447.58 Da
LogP (Crippen) 2.89
H-bond donors 2
H-bond acceptors 6
TPSA 99.18 Ų
Rotatable bonds 11
Aromatic rings 1 / 2
Heavy atoms 32
Fraction sp³ C 0.62
Formula C₂₄H₃₇N₃O₅

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 99.2
  • −1 ≤ LogP ≤ 5 2.89
Lipinski's Rule of Five Pass 0 violations
  • MW ≤ 500 Da 447.6
  • LogP ≤ 5 2.89
  • H-bond donors ≤ 5 2
  • H-bond acceptors ≤ 10 6
Veber's rules Fail
  • Rotatable bonds ≤ 10 11
  • TPSA ≤ 140 Ų 99.2
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
CCCC[C@H](CN(O)C=O)C(=O)N[C@H](C(=O)c1ccc(N2CCOCC2)cc1)C(C)(C)C
InChI 
InChI=1S/C24H37N3O5/c1-5-6-7-19(16-27(31)17-28)23(30)25-22(24(2,3)4)21(29)18-8-10-20(11-9-18)26-12-14-32-15-13-26/h8-11,17,19,22,31H,5-7,12-16H2,1-4H3,(H,25,30)/t19-,22-/m1/s1
InChIKey 
RMFDZNQYKLNRBN-DENIHFKCSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Binding sites
PF01327

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to VK055_3786.

PDB 12

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 99

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)