Ligand profile

CHEMBL5754009

Bioactivity hit from ChEMBL on a similar protein.

Bound to: VK055_4629 — MFS transporter, sugar porter family protein

Via homolog UniProt O97467 Formula C₃₀H₃₃N₇O₃

pchembl 7.26 ~55.0 nM

Mol. weight 539.64 Da

Permeability Check

PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID: CHEMBL5754009
UniProt (similar protein): O97467
pchembl: 7.260 (~55.0 nM)
Target protein: VK055_4629

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 539.64 Da

LogP (Crippen) 4.48

H-bond donors 3

H-bond acceptors 7

TPSA 125.13 Å²

Rotatable bonds 7

Aromatic rings 4 / 5

Heavy atoms 40

Fraction sp³ C 0.30

Formula C₃₀H₃₃N₇O₃

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Å² and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

TPSA ≤ 90 Å² 125.1
−1 ≤ LogP ≤ 5 4.48

Lipinski's Rule of Five Pass 1 violation

MW ≤ 500 Da 539.6
LogP ≤ 5 4.48
H-bond donors ≤ 5 3
H-bond acceptors ≤ 10 7

Veber's rules Pass

Rotatable bonds ≤ 10 7
TPSA ≤ 140 Å² 125.1

PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES

CC(=O)N1CCc2nc(-c3cccc(OCC(=O)NC(C)(C)C)c3)nc(Nc3ccc(-c4cn[nH]c4)cc3)c2C1

InChI

InChI=1S/C30H33N7O3/c1-19(38)37-13-12-26-25(17-37)29(33-23-10-8-20(9-11-23)22-15-31-32-16-22)35-28(34-26)21-6-5-7-24(14-21)40-18-27(39)36-30(2,3)4/h5-11,14-16H,12-13,17-18H2,1-4H3,(H,31,32)(H,36,39)(H,33,34,35)

InChIKey

RQGCWKKYDAVZGQ-UHFFFAOYSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method: LigQ nearest_k
Source: ChEMBL
Activity: 932065
Binding sites: PF00083

External resources

Open this ligand in third-party databases and cheminformatics tools.

ChEMBL ChEMBL compound CHEMBL5754009 →
UniProt UniProt O97467 (homolog) →
PubChem PubChem (by InChIKey) →
Cheminformatics SwissADME prediction →
Cheminformatics SwissTargetPrediction →
Web Google Scholar (search “CHEMBL5754009”) →

Other ligands for this protein

Quick navigation to other ligands bound to VK055_4629.

PDB 4

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 99

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)