Ligand profile

CHEMBL2272022

Bioactivity hit from ChEMBL on a similar protein.

Bound to: VK055_4843 — NADH:ubiquinone oxidoreductase, membrane subunitH

Via homolog UniProt P03887 Formula C₂₉H₃₃NO₆
pchembl 6.43 ~371.5 nM
Mol. weight 491.58 Da
Permeability Check
PAINS Alert

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL2272022
UniProt (similar protein)
P03887
pchembl
6.430 (~371.5 nM)
Target protein
VK055_4843

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 491.58 Da
LogP (Crippen) 5.21
H-bond donors 0
H-bond acceptors 6
TPSA 82.14 Ų
Rotatable bonds 8
Aromatic rings 2 / 3
Heavy atoms 36
Fraction sp³ C 0.34
Formula C₂₉H₃₃NO₆

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 82.1
  • −1 ≤ LogP ≤ 5 5.21
Lipinski's Rule of Five Pass 1 violation
  • MW ≤ 500 Da 491.6
  • LogP ≤ 5 5.21
  • H-bond donors ≤ 5 0
  • H-bond acceptors ≤ 10 6
Veber's rules Pass
  • Rotatable bonds ≤ 10 8
  • TPSA ≤ 140 Ų 82.1
PAINS Alert

Matches PAINS filter: quinone_A(370). May be a frequent false positive in HTS — review carefully.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
CCN(CC1=C(C)C(=O)C(OC)=C(OC)C1=O)C(=O)c1ccc(Oc2ccc(C(C)(C)C)cc2)cc1
InChI 
InChI=1S/C29H33NO6/c1-8-30(17-23-18(2)24(31)26(34-6)27(35-7)25(23)32)28(33)19-9-13-21(14-10-19)36-22-15-11-20(12-16-22)29(3,4)5/h9-16H,8,17H2,1-7H3
InChIKey 
RPZDWFVWCRKWPX-UHFFFAOYSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Binding sites
PF00146

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to VK055_4843.

PDB 23

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 28

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)