Ligand profile

CHEMBL608845

Bioactivity hit from ChEMBL on a similar protein.

Bound to: VK055_5117 — 2,3-dihydroxybenzoate-AMP ligase

Via homolog UniProt P71716 Formula C₂₄H₃₄N₆O₈S
pchembl 7.61 ~24.5 nM
Mol. weight 566.64 Da
Permeability Check
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL608845
UniProt (similar protein)
P71716
pchembl
7.610 (~24.5 nM)
Target protein
VK055_5117

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 566.64 Da
LogP (Crippen) 0.38
H-bond donors 5
H-bond acceptors 13
TPSA 202.36 Ų
Rotatable bonds 9
Aromatic rings 3 / 4
Heavy atoms 39
Fraction sp³ C 0.46
Formula C₂₄H₃₄N₆O₈S

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 202.4
  • −1 ≤ LogP ≤ 5 0.38
Lipinski's Rule of Five Fail 2 violations
  • MW ≤ 500 Da 566.6
  • LogP ≤ 5 0.38
  • H-bond donors ≤ 5 5
  • H-bond acceptors ≤ 10 13
Veber's rules Fail
  • Rotatable bonds ≤ 10 9
  • TPSA ≤ 140 Ų 202.4
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
CCN(CC)CC.Nc1ncnc2c1ccn2[C@@H]1O[C@H](COS(=O)(=O)NC(=O)c2ccccc2O)[C@@H](O)[C@H]1O
InChI 
InChI=1S/C18H19N5O8S.C6H15N/c19-15-10-5-6-23(16(10)21-8-20-15)18-14(26)13(25)12(31-18)7-30-32(28,29)22-17(27)9-3-1-2-4-11(9)24;1-4-7(5-2)6-3/h1-6,8,12-14,18,24-26H,7H2,(H,22,27)(H2,19,20,21);4-6H2,1-3H3/t12-,13-,14-,18-;/m1./s1
InChIKey 
ZIGJCKDOFQKJOD-MSUWDKDZSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Curation
pdb_similarity_tanimoto
Binding sites
PF00501' 'PF13193

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to VK055_5117.

PDB 7

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 81

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)