Ligand profile

ZINC39242628

Virtual-screening candidate from ZINC.

Bound to: VK055_3722 — amidohydrolase family protein

Via homolog UniProt P25524 Formula C₁₂H₂₆O₆
Tanimoto 0.55
Mol. weight 266.33 Da
Permeability High
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
ZINC39242628
UniProt (similar protein)
P25524
Tanimoto
0.545
Target protein
VK055_3722

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 266.33 Da
LogP (Crippen) -0.19
H-bond donors 2
H-bond acceptors 6
TPSA 77.38 Ų
Rotatable bonds 13
Aromatic rings 0 / 0
Heavy atoms 18
Fraction sp³ C 1.00
Formula C₁₂H₂₆O₆

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy High

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 77.4
  • −1 ≤ LogP ≤ 5 -0.19
Lipinski's Rule of Five Pass 0 violations
  • MW ≤ 500 Da 266.3
  • LogP ≤ 5 -0.19
  • H-bond donors ≤ 5 2
  • H-bond acceptors ≤ 10 6
Veber's rules Fail
  • Rotatable bonds ≤ 10 13
  • TPSA ≤ 140 Ų 77.4
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
C[C@H](O)COCCOCCOCCOC[C@H](C)O
InChI 
InChI=1S/C12H26O6/c1-11(13)9-17-7-5-15-3-4-16-6-8-18-10-12(2)14/h11-14H,3-10H2,1-2H3/t11-,12-/m0/s1
InChIKey 
FWSQTYSSARGHQF-RYUDHWBXSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Query
PXN
Homolog
P25524

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to VK055_3722.

PDB 6

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ZINC 3

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)