Ligand profile

ZINC2069682477

Virtual-screening candidate from ZINC.

Bound to: VK055_4288 — prolipoprotein diacylglyceryl transferase

Via homolog UniProt P60955 Formula C₂₂H₄₅O₉P
Tanimoto 0.62
Mol. weight 484.57 Da
Permeability Check
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
ZINC2069682477
UniProt (similar protein)
P60955
Tanimoto
0.620
Target protein
VK055_4288

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 484.57 Da
LogP (Crippen) 3.71
H-bond donors 4
H-bond acceptors 8
TPSA 142.75 Ų
Rotatable bonds 22
Aromatic rings 0 / 0
Heavy atoms 32
Fraction sp³ C 0.95
Formula C₂₂H₄₅O₉P

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 142.8
  • −1 ≤ LogP ≤ 5 3.71
Lipinski's Rule of Five Pass 0 violations
  • MW ≤ 500 Da 484.6
  • LogP ≤ 5 3.71
  • H-bond donors ≤ 5 4
  • H-bond acceptors ≤ 10 8
Veber's rules Fail
  • Rotatable bonds ≤ 10 22
  • TPSA ≤ 140 Ų 142.8
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
CC(C)CCCCCCCCCCCCC(=O)OC[C@H](O)CO[P@](=O)(O)OC[C@H](O)CO
InChI 
InChI=1S/C22H45O9P/c1-19(2)13-11-9-7-5-3-4-6-8-10-12-14-22(26)29-16-21(25)18-31-32(27,28)30-17-20(24)15-23/h19-21,23-25H,3-18H2,1-2H3,(H,27,28)/t20-,21+/m1/s1
InChIKey 
VJBFQKCFAQJCQF-RTWAWAEBSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Query
PGT
Homolog
P60955

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to VK055_4288.

PDB 1

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 1

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 49

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)