Protein profile

VK055_0107

yobH-like family protein

Genome: KpATCC43816

Gene: AIK78735.1 Structure source: ColabFold
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Amino acids 69
Annotations 0
Features 8
PDB binders 0
Druggability 0.513

Overview

Basic information about this protein and its source genome.

Accession
VK055_0107
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK78735.1
Status
annotated
Amino acids
69
Structure source
ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
63.768
DEG E-value
1.61e-28
Localization
CytoplasmicMembrane
ColabFold pLDDT
75.29

Selected Druggability evidence

ColabFold / curated model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.513
Structure CB_VK055_0107
Pocket Pocket 4
P2Rank
Structure CB_VK055_0107
Pocket No pockets
ColabFold model
FPocket 0.513 · Pocket 4
Core conservation Accessory gene
Roary core
CoreCruncher accessory
Gut microbiome 80 / 4744 genomes with a hit
Normalized 0.017

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

8 records
Show feature table
Start End DB Term Name
1 14 Phobius SIGNAL_PEPTIDE Signal peptide region
1 1 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
15 69 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
11 14 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
1 61 Pfam PF13996 YobH-like protein
1 61 InterPro IPR025611 YobH-like protein
2 10 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
1 18 SignalP_EUK SignalP-noTM SignalP-noTM

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold VK055_0107
ColabFold — — full sequence — Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
4 0.513
1 0.007
3 0.004
2 0.002