Protein profile

VK055_0487

lactoylglutathione lyase

Genome: KpATCC43816

Gene: gloA AIK79110.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GYY2
Amino acids 135
Annotations 5
Features 17
PDB binders 16
Druggability 0.282

Overview

Basic information about this protein and its source genome.

Accession
VK055_0487
Gene
gloA AIK79110.1
Status
annotated
Amino acids
135
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
36.301
Human E-value
1.0099999999999999e-24
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Cytoplasmic
ColabFold pLDDT
95.23

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.282
Structure A0A0H3GYY2
Pocket Pocket 2
P2Rank 0.021
Structure A0A0H3GYY2
Pocket Pocket 1
ColabFold model
FPocket 0.457 · Pocket 3
P2Rank 0.035 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 176 / 4744 genomes with a hit
Normalized 0.037

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 4 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

4
  • GO:0004462 Catalysis of the reaction: (R)-S-lactoylglutathione = glutathione + methylglyoxal.
  • GO:0046872 Binding to a metal ion.
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0019243 OBSOLETE. The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into pyruvate via the intermediate (R)-S-lactoyl-glutathione. Glutathione is used in the first step of the pathway and then regenerated in the second step.

Sequence Features

Domain/signature hits from InterPro and related databases.

17 records
Show feature table
Start End DB Term Name
2 129 PANTHER PTHR46036 LACTOYLGLUTATHIONE LYASE
1 131 FunFam G3DSA:3.10.180.10:FF:000002 Lactoylglutathione lyase
1 133 Gene3D G3DSA:3.10.180.10 -
1 133 InterPro IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
3 124 CDD cd16358 GlxI_Ni
5 26 ProSitePatterns PS00934 Glyoxalase I signature 1.
5 26 InterPro IPR018146 Glyoxalase I, conserved site
1 128 SUPERFAMILY SSF54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
1 128 InterPro IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
2 126 ProSiteProfiles PS51819 Vicinal oxygen chelate (VOC) domain profile.
2 126 InterPro IPR037523 Vicinal oxygen chelate (VOC) domain
69 81 ProSitePatterns PS00935 Glyoxalase I signature 2.
69 81 InterPro IPR018146 Glyoxalase I, conserved site
3 123 Pfam PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
3 123 InterPro IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain
2 128 NCBIfam TIGR00068 lactoylglutathione lyase
2 128 InterPro IPR004361 Glyoxalase I

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GYY2
AlphaFold full sequence Viewing
ColabFold VK055_0487
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.282
3 0.003
4 0.003
1 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 1.61 0.021
2 1.6 0.021
3 1.16 0.008

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

127 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3WL Q9CPU0 270.2 Da LogP 2.58 TPSA 90.9 ✓ Ro5 Alert c1ccc(cc1)C2=CC(=O)c3c(cc(c(c3O)O)O)O2
CBW Q9CPU0 470.7 Da LogP 6.41 TPSA 74.6 1 viol. ✓ Clean CC1([C@@H]2CC[C@@]3([C@@H]([C@]2(CC[C@@H]1O)C)C…
E1L Q9CPU0 391.4 Da LogP 4.82 TPSA 40.3 ✓ Ro5 Alert c1ccc2c(c1)c3c([nH]2)CN(CC3)C(=S)Nc4ccc(cc4)OC(…
GIP Q04760 570.4 Da LogP -0.63 TPSA 202.5 2 viol. ✓ Clean c1cc(ccc1N(C(O)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[…
GNB Q04760 488.5 Da LogP -1.00 TPSA 231.4 1 viol. ✓ Clean c1cc(ccc1COC(O)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[…
GSB Q04760 397.5 Da LogP -0.20 TPSA 158.8 ✓ Ro5 ✓ Clean c1ccc(cc1)CSC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H…
GSH B6TPH0 307.3 Da LogP -2.21 TPSA 158.8 1 viol. ✓ Clean C(CC(=O)N[C@@H](CS)C(=O)NCC(=O)O)[C@@H](C(=O)O)N
GTX Q04760 392.5 Da LogP -0.54 TPSA 160.4 ✓ Ro5 ✓ Clean CCCCCCSC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=…
HPU Q04760 356.4 Da LogP 2.79 TPSA 88.4 ✓ Ro5 ✓ Clean CS(=O)(=O)Nc1cccc(c1)C2=CC(=CC(=O)N2O)c3ccccc3
HPW Q04760 449.5 Da LogP 2.16 TPSA 134.6 ✓ Ro5 ✓ Clean CS(=O)(=O)Nc1cc(cc(c1)NS(=O)(=O)C)C2=CC(=CC(=O)…
IMN Q9CPU0 357.8 Da LogP 3.93 TPSA 68.5 ✓ Ro5 ✓ Clean Cc1c(c2cc(ccc2n1C(=O)c3ccc(cc3)Cl)OC)CC(=O)O
MGI Q9CPU0 304.3 Da LogP 3.00 TPSA 96.2 ✓ Ro5 Alert Cc1cc(c(c(c1)Oc2cc(c(c(c2)O)C(=O)OC)C)O)O
SIN Q9I5L8 118.1 Da LogP -0.06 TPSA 74.6 ✓ Ro5 ✓ Clean C(CC(=O)O)C(=O)O
TAM Q9I5L8 163.2 Da LogP -1.17 TPSA 86.7 ✓ Ro5 ✓ Clean C(CO)C(CCO)(CCO)N
ZBF Q9CPU0 448.4 Da LogP -0.95 TPSA 199.4 1 viol. ✓ Clean C#Cc1cccc(c1)N(C(=O)CCC(C(=O)NCC(=O)O)NC(=O)CCC…
ZST Q9CPU0 419.4 Da LogP 3.70 TPSA 85.1 ✓ Ro5 ✓ Clean c1ccc2c(c1)C(=NN(C2=O)Cc3nc4cc(ccc4s3)C(F)(F)F)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.