Metabolic network

VK055_1531

L,D-transpeptidase YcbB

Network centrality 0
Chokepoint No

Metabolic context: no human homolog detected.

Pathways

KEGG pathways this gene's reaction(s) belong to.

No specific KEGG pathway assigned - this reaction either has no KEGG mapping, or only matches a generic overview map with no route-level information.

Network

Two-hop reaction neighborhood around this protein; pathway boxes use one primary KEGG route per reaction when several mappings exist. Click a pathway box to open its full route map.

Reaction catalyzed by this protein Chokepoint reaction Neighbor reaction Pathway grouping (2+ reactions sharing a route) Connected reaction (arrow shows direction, when known) ⇌ Reversible reaction (double arrow) Cross-pathway connection

Selected reaction

Click a node in the network above, or a row in the table below, to inspect it here.

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EC
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Pathway
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Genes
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Role
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Isoenzymes
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Catalyzed reactions

Every reaction this gene catalyzes, with substrates/products and isoenzyme backup.

RXN-16665[CCO-PERI-BAC]-A-DONOR-PG-WITH-MESODAP-TETRAPEPTIDE/GLY//CPD-17969/D-ALANINE.76.

EC - · RXN-16665[CCO-PERI-BAC]-A-DONOR-PG-WITH-MESODAP-TETRAPEPTIDE/GLY//CPD-17969/D-ALANINE.76. · not reversible · 6 isoenzymes

a donor peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide glycine
a nascent peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide D-alanine

RXN-16665[CCO-CYTOSOL]-A-DONOR-PG-WITH-MESODAP-TETRAPEPTIDE/GLY//CPD-17969/D-ALANINE.75.

EC - · RXN-16665[CCO-CYTOSOL]-A-DONOR-PG-WITH-MESODAP-TETRAPEPTIDE/GLY//CPD-17969/D-ALANINE.75. · not reversible · 6 isoenzymes

a donor peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide glycine
a nascent peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-glycine) tetrapeptide D-alanine

RXN0-7489[CCO-CYTOSOL]-A-DONOR-PG-WITH-MESODAP-TETRAPEPTIDE/AN-ACCEPTOR-PG-WITH-MESODAP-TETRAPEPTIDE//CPD-17947/D-ALANINE.112.

EC - · RXN0-7489[CCO-CYTOSOL]-A-DONOR-PG-WITH-MESODAP-TETRAPEPTIDE/AN-ACCEPTOR-PG-WITH-MESODAP-TETRAPEPTIDE//CPD-17947/D-ALANINE.112. · not reversible · 6 isoenzymes

a donor peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide an acceptor peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide
a peptidoglycan with L,D cross links (meso-diaminopimelate containing) D-alanine

RXN0-7489[CCO-PERI-BAC]-A-DONOR-PG-WITH-MESODAP-TETRAPEPTIDE/AN-ACCEPTOR-PG-WITH-MESODAP-TETRAPEPTIDE//CPD-17947/D-ALANINE.113.

EC - · RXN0-7489[CCO-PERI-BAC]-A-DONOR-PG-WITH-MESODAP-TETRAPEPTIDE/AN-ACCEPTOR-PG-WITH-MESODAP-TETRAPEPTIDE//CPD-17947/D-ALANINE.113. · not reversible · 6 isoenzymes

a donor peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide an acceptor peptidoglycan with (L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine) tetrapeptide
a peptidoglycan with L,D cross links (meso-diaminopimelate containing) D-alanine

Imported from KpATCC43816.sbml · 2026-07-09