Protein profile

VK055_1633

phage major capsid protein, P2 family

Genome: KpATCC43816

Gene: AIK80253.1 Structure source: AlphaFold + ColabFold UniProt A0A483LCZ0
Export view
Amino acids 340
Annotations 0
Features 4
PDB binders 0
Druggability 0.614

Overview

Basic information about this protein and its source genome.

Accession
VK055_1633
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK80253.1
Status
annotated
Amino acids
340
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
88.55

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.614
Structure A0A483LCZ0
Pocket Pocket 2
P2Rank 0.457
Structure A0A483LCZ0
Pocket Pocket 1
ColabFold model
FPocket 0.305 · Pocket 1
P2Rank 0.458 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 19 / 4744 genomes with a hit
Normalized 0.004

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

4 records
Show feature table
Start End DB Term Name
11 326 Pfam PF05125 Phage major capsid protein, P2 family
11 326 InterPro IPR006441 Bacteriophage P2, capsid
8 326 NCBIfam TIGR01551 phage major capsid protein, P2 family
8 326 InterPro IPR006441 Bacteriophage P2, capsid

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A483LCZ0
AlphaFold — — full sequence — Viewing
ColabFold VK055_1633
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.614
6 0.37
1 0.016
7 0.001

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 9.88 0.457
2 3.05 0.081
3 2.41 0.052
4 1.52 0.018
5 1.29 0.012