Protein profile

VK055_1713

endonuclease/Exonuclease/phosphatase family protein

Genome: KpATCC43816

Gene: AIK80333.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GLT2
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Amino acids 253
Annotations 1
Features 8
PDB binders 0
Druggability 0.335

Overview

Basic information about this protein and its source genome.

Accession
VK055_1713
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK80333.1
Status
annotated
Amino acids
253
Structure source
AlphaFold + ColabFold
GO
GO:0003824 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
81.818
DEG E-value
2.34e-155
Localization
Cytoplasmic
ColabFold pLDDT
89.59

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.335
Structure A0A0H3GLT2
Pocket Pocket 11
P2Rank 0.475
Structure A0A0H3GLT2
Pocket Pocket 1
ColabFold model
FPocket 0.781 · Pocket 3
P2Rank 0.498 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 79 / 4744 genomes with a hit
Normalized 0.017

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0003824 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

Sequence Features

Domain/signature hits from InterPro and related databases.

8 records
Show feature table
Start End DB Term Name
9 253 Gene3D G3DSA:3.60.10.10 Endonuclease/exonuclease/phosphatase
9 253 InterPro IPR036691 Endonuclease/exonuclease/phosphatase superfamily
8 251 SUPERFAMILY SSF56219 DNase I-like
8 251 InterPro IPR036691 Endonuclease/exonuclease/phosphatase superfamily
9 179 PANTHER PTHR14859 CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR
9 253 FunFam G3DSA:3.60.10.10:FF:000020 Endonuclease/exonuclease/phosphatase family protein
33 244 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family
33 244 InterPro IPR005135 Endonuclease/exonuclease/phosphatase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GLT2
AlphaFold — — full sequence — Viewing
ColabFold VK055_1713
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
11 0.335
7 0.032
5 0.005
1 0.003

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 10.25 0.475
2 3.34 0.094