Protein profile

VK055_2077

short chain dehydrogenase family protein

Genome: KpATCC43816

Gene: AIK80682.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GP68
Amino acids 256
Annotations 1
Features 29
PDB binders 13
Druggability 0.993

Overview

Basic information about this protein and its source genome.

Accession
VK055_2077
Gene
AIK80682.1
Status
annotated
Amino acids
256
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
50.0
Human E-value
8e-11
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
41.209
DEG E-value
2.82e-27
Localization
Cytoplasmic
ColabFold pLDDT
95.65

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.993
Structure A0A0H3GP68
Pocket Pocket 2
P2Rank 0.972
Structure A0A0H3GP68
Pocket Pocket 1
ColabFold model
FPocket 0.992 · Pocket 1
P2Rank 0.968 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 111 / 4744 genomes with a hit
Normalized 0.023

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.

Sequence Features

Domain/signature hits from InterPro and related databases.

29 records
Show feature table
Start End DB Term Name
20 256 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 253 Gene3D G3DSA:3.40.50.720 -
146 165 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
146 165 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
73 84 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
73 84 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
126 134 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature
126 134 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
15 19 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
2 191 PANTHER PTHR43313 SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C
1 19 Phobius SIGNAL_PEPTIDE Signal peptide region
3 191 Pfam PF00106 short chain dehydrogenase
3 191 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
3 231 CDD cd05374 17beta-HSD-like_SDR_c
4 14 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
73 84 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
167 184 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
167 184 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
4 21 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
4 21 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
146 165 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
120 136 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature
120 136 InterPro IPR002347 Short-chain dehydrogenase/reductase SDR
3 182 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
1 3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
3 253 SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
3 253 InterPro IPR036291 NAD(P)-binding domain superfamily
133 161 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature.
133 161 InterPro IPR020904 Short-chain dehydrogenase/reductase, conserved site

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GP68
AlphaFold full sequence Viewing
ColabFold VK055_2077
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.993

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 33.69 0.947
2 1.32 0.015

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

163 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
5SD P14061 288.4 Da LogP 4.17 TPSA 34.1 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4([…
AND P14061 288.4 Da LogP 3.88 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H]3[C@H]([C@@H]1CCC2=O)CC=C4[C@@]3(…
AOM P14061 292.5 Da LogP 3.75 TPSA 40.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H](C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4…
ASD P14061 286.4 Da LogP 4.09 TPSA 34.1 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C=C1CC[C@@H]3[C@@H]2CC[C@]4([C@H]…
DHT P14061 290.4 Da LogP 3.96 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CCC(=O)C[C@@H]1CC[C@@H]3[C@@H]2CC[C@]4([…
EM9 P14061 560.3 Da LogP 8.21 TPSA 60.8 2 viol. ✓ Clean CCCCN(C)C(=O)CCCCCCCCCC[C@@H]1Cc2cc(ccc2[C@@H]3…
EQI P14061 268.4 Da LogP 3.74 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC=C3[C@@H]1CCC2=O)O
EST P14061 272.4 Da LogP 3.61 TPSA 40.5 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CC[C@@H…
F0A P14061 435.6 Da LogP 4.19 TPSA 92.8 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4cc(c(cc4CC[C@H]3[C@@H]1C[C@@H…
F0D P14061 496.5 Da LogP 5.41 TPSA 63.3 1 viol. ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
HYC P14061 677.8 Da LogP 4.54 TPSA 186.1 2 viol. ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]…
J3Z P14061 270.4 Da LogP 3.82 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CCC2=O)O
TES P14061 288.4 Da LogP 3.88 TPSA 37.3 ✓ Ro5 ✓ Clean C[C@]12CC[C@H]3[C@H]([C@@H]1CC[C@@H]2O)CCC4=CC(…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.