Target candidate with partial support; inspect missing evidence before prioritizing.
Automated synthesis of the evidence currently loaded. Review the underlying records before prioritizing this protein.
Main supporting evidence
Risks to review
Evidence coverage
Terms and data sources used on this page
PDB: experimentally determined structures from the Protein Data Bank. These are the strongest structural evidence, but may cover only part of the protein.
AlphaFold DB model: a precomputed predicted structure downloaded from AlphaFold Database/UniProt, not an experiment performed here.
ColabFold model: a predicted structure generated for this workspace; interpret it with coverage and confidence.
pLDDT: confidence score for predicted structures. High values support local geometry; low values mean the region should not drive pocket interpretation.
FPocket / P2Rank: software tools that predict possible ligand-binding pockets on a 3D structure. They are useful screening signals, not experimental validation.
Druggability: a pocket-based estimate of whether a small molecule could bind productively. It does not mean a drug already exists.
PDB ligand: a compound observed in an experimental structure. Direct same-protein records are stronger than homolog-transferred records.
ChEMBL: a public database of measured compound bioactivity. Direct entries are stronger than entries transferred from similar proteins.
ZINC: a purchasable-compound database. Here it marks proposed candidates from chemical similarity, not measured binders.
LigQ / LigQ_2: an internal Target pipeline step that gathers PDB, ChEMBL, and ZINC ligand evidence for each protein.
Off-target: sequence similarity to proteins we prefer not to hit, such as human proteins or beneficial gut microbiome proteins.
DEG: Database of Essential Genes. A match suggests the protein resembles genes known to be essential in other organisms.
Roary / CoreCruncher: pan-genome tools used to decide whether a gene is core across analyzed strains or accessory/strain-specific.
EC / GO: functional annotations: EC describes enzyme reactions; GO describes biological process, molecular function, or cellular component.
KEGG pathway: a curated metabolic route label used here to group reactions imported from the metabolic model.
Chokepoint: a metabolic reaction that is the only producer or consumer of a metabolite in the imported model.
Prioritization evidence
Selectivity, essentiality, structural confidence, conservation, and predicted binding-site evidence.
Off-target risk
- Human off-target
- Hit
- Human identity (%)
- 50.575 Lower values reduce human off-target concern.
- Human E-value
- 9.52e-20
- Gut microbiome similarity
- 9.4% of screened genomes Lower prevalence suggests narrower overlap with the screened gut microbiome.
Essentiality
- Essential (DEG)
- Y
- DEG identity (%)
- 89.963 Higher values support similarity to known essential genes.
- DEG E-value
- 0.0 Smaller values mean stronger essential-gene similarity.
Structure confidence
- ColabFold pLDDT
- 96.29 0-100 confidence; >70 supports local structural interpretation.
Binding-site evidence
AlphaFold DB / UniProt modelP2Rank's binding-site probability is the primary druggability signal shown across the app; FPocket's druggability score is shown alongside it for comparison. Both estimate small-molecule pocket quality after applying the curated structure priority — neither is experimental binding evidence. The 3D viewer may show a different loaded structure, so visible pockets can differ.
Sequence
Primary amino-acid sequence viewer.
MDKKIGFIGCGNMGKAILGGLIASGQVQPGQIWVYTPSPDKVAALRDQYGINAASSAQEVAQIADIVFGAVKPGIMTKVLGDIASSLNKESLVVSIAAGVTLEQLARALGHDRKIIRAMPNTPSLVNAGMTSVTPNALVSSEDVAEVLTIFRCFGQAEQIAEPMIHPVVGVSGSAPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLESGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRSAVIEAITQCMEKSEKLSRS
Functional annotations
Enzyme classification and Gene Ontology terms linked to this protein.
Subcellular localization
- Localization
- Cytoplasmic
Enzyme Commission (EC)
1Gene Ontology (GO)
4- GO:0004735 Catalysis of the reaction: L-proline + NADP+ = 1-pyrroline-5-carboxylate + NADPH + H+.
- GO:0006561 OBSOLETE. The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
- GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
- GO:0055129 The chemical reactions and pathways resulting in the formation of L-proline, an L-enantiomer of a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
Sequence domains and features
Domain and signature matches imported from InterPro and related databases.
Show feature table
| Start | End | DB | Term | Name |
|---|---|---|---|---|
| 162 | 268 | SUPERFAMILY | SSF48179 | 6-phosphogluconate dehydrogenase C-terminal domain-like |
| 162 | 268 | InterPro | IPR008927 | 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily |
| 3 | 266 | Hamap | MF_01925 | Pyrroline-5-carboxylate reductase [proC]. |
| 3 | 266 | InterPro | IPR000304 | Pyrroline-5-carboxylate reductase |
| 2 | 269 | PIRSF | PIRSF000193 | P5CR |
| 2 | 269 | InterPro | IPR000304 | Pyrroline-5-carboxylate reductase |
| 3 | 268 | PANTHER | PTHR11645 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
| 165 | 269 | FunFam | G3DSA:1.10.3730.10:FF:000001 | Pyrroline-5-carboxylate reductase |
| 4 | 99 | Pfam | PF03807 | NADP oxidoreductase coenzyme F420-dependent |
| 4 | 99 | InterPro | IPR028939 | Pyrroline-5-carboxylate reductase, catalytic, N-terminal |
| 1 | 164 | FunFam | G3DSA:3.40.50.720:FF:000105 | Pyrroline-5-carboxylate reductase |
| 1 | 158 | Gene3D | G3DSA:3.40.50.720 | - |
| 222 | 244 | ProSitePatterns | PS00521 | Delta 1-pyrroline-5-carboxylate reductase signature. |
| 222 | 244 | InterPro | IPR000304 | Pyrroline-5-carboxylate reductase |
| 163 | 266 | Pfam | PF14748 | Pyrroline-5-carboxylate reductase dimerisation |
| 163 | 266 | InterPro | IPR029036 | Pyrroline-5-carboxylate reductase, dimerisation domain |
| 161 | 269 | Gene3D | G3DSA:1.10.3730.10 | - |
| 3 | 157 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains |
| 3 | 157 | InterPro | IPR036291 | NAD(P)-binding domain superfamily |
| 5 | 266 | NCBIfam | TIGR00112 | pyrroline-5-carboxylate reductase |
| 5 | 266 | InterPro | IPR000304 | Pyrroline-5-carboxylate reductase |
3D structure
Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; AlphaFold DB and ColabFold models typically cover the full protein but remain computational predictions.
How colors and pocket overlays are used
Pocket details Inspect a specific pocket, or open the full viewer
- Method
- -
- Score
- -
- Visible layer
- -
- Residues
- -
- Pocket properties
- -
Selecting a pocket opens its details and centers the viewer without clearing other active layers. Use Focus this pocket when you want to hide the rest; use Surface for the wider residue environment.
Binding pockets · P2Rank
Druggability (P2Rank): high ≥ 0.5 · medium 0.2–0.49 · low < 0.2
Binding pockets · FPocket
Druggability (FPocket): high ≥ 0.7 · medium 0.4–0.69 · low < 0.4
Residue sets
Binding pockets · P2Rank
Druggability (P2Rank): high ≥ 0.5 · medium 0.2–0.49 · low < 0.2
Binding pockets · FPocket
Druggability (FPocket): high ≥ 0.7 · medium 0.4–0.69 · low < 0.4
Residue sets
All structural evidence
Structural evidence
0 + 2Experimental PDB entries plus predicted AlphaFold DB or ColabFold models. Click Switch to display a different loaded structure in the viewer.
| Entry | Method | Resolution | Chain | Coverage | Links | Status |
|---|---|---|---|---|---|---|
|
AlphaFold DB
AF_A0A0H3GIZ4
|
AlphaFold DB | — | — | full sequence | — | Viewing |
|
ColabFold
VK055_2227
|
ColabFold | — | — | full sequence | — | Loaded |
Ligand evidence
Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.
Structural ligand evidence is available for this target.
Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in Target, use Open crystal to inspect it in the structure viewer.
No PDB structure with a co-crystallized ligand found for this exact protein.
Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.
| Ligand | Source crystal | UniProt (homolog) | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|---|
| FPK RCSB PDB | P32322 | 143.1 Da LogP -0.31 TPSA 57.6 | ✓ Ro5 | ✓ Clean |
C1C[C@H](N(C1)C=O)C(=O)O
|
|
| IQ0 RCSB PDB | P32322 | 114.1 Da LogP 1.26 TPSA 37.3 | ✓ Ro5 | ✓ Clean |
C1CCC(C1)C(=O)O
|
|
| PRS RCSB PDB | P32322 | 133.2 Da LogP -0.27 TPSA 49.3 | ✓ Ro5 | ✓ Clean |
C1[C@H](NCS1)C(=O)O
|
|
| T2C RCSB PDB | P32322 | 133.2 Da LogP -0.27 TPSA 49.3 | ✓ Ro5 | ✓ Clean |
C1CS[C@H](N1)C(=O)O
|
|
| TFB RCSB PDB | P32322 | 116.1 Da LogP 0.25 TPSA 46.5 | ✓ Ro5 | ✓ Clean |
C1C[C@H](OC1)C(=O)O
|
Experimental bioactivity from ChEMBL measured directly on this protein. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL bioactivity data found for this exact protein.
Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL hits found through similar proteins.
Proposed virtual-screening candidates from ZINC. Score = Tanimoto similarity to a known binder (0–1; higher = more similar).
| Ligand | Tanimoto | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|
| ZINC13167037 ZINC | 0.609 | 225.3 Da LogP 1.50 TPSA 57.6 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCN(C(=O)C2CCCC2)CC1
|
| ZINC154886 ZINC | 0.583 | 239.3 Da LogP 1.89 TPSA 57.6 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCN(C(=O)C2CCCCC2)CC1
|
| ZINC37561225 ZINC | 0.583 | 239.3 Da LogP 1.94 TPSA 66.4 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCC(NC(=O)C2CCCC2)CC1
|
| ZINC6741121 ZINC | 0.571 | 211.3 Da LogP 1.96 TPSA 29.5 | ✓ Ro5 | ✓ Clean |
O=C([C@@H]1CCCO1)N1CCCCCCC1
|
| ZINC6741122 ZINC | 0.571 | 211.3 Da LogP 1.96 TPSA 29.5 | ✓ Ro5 | ✓ Clean |
O=C([C@H]1CCCO1)N1CCCCCCC1
|
| ZINC1697709 ZINC | 0.565 | 224.3 Da LogP 3.85 TPSA 37.3 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCC(CC2CCCCC2)CC1
|
| ZINC70569221 ZINC | 0.565 | 211.3 Da LogP 1.11 TPSA 57.6 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CN(C(=O)C2CCCCC2)C1
|
| ZINC108323602 ZINC | 0.563 | 255.3 Da LogP 1.32 TPSA 75.6 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@H]1CCCCC[C@H]1NC(=O)[C@H]1CCCO1
|
| ZINC157702634 ZINC | 0.563 | 255.3 Da LogP 1.32 TPSA 75.6 | ✓ Ro5 | ✓ Clean |
O=C(N[C@@H]1CCCCC[C@H]1C(=O)O)[C@H]1CCCO1
|
| ZINC94744170 ZINC | 0.563 | 255.3 Da LogP 1.32 TPSA 75.6 | ✓ Ro5 | ✓ Clean |
O=C(N[C@@H]1CCCCC[C@@H]1C(=O)O)[C@@H]1CCCO1
|
| ZINC94744171 ZINC | 0.563 | 255.3 Da LogP 1.32 TPSA 75.6 | ✓ Ro5 | ✓ Clean |
O=C(N[C@@H]1CCCCC[C@H]1C(=O)O)[C@@H]1CCCO1
|
| ZINC1465716 ZINC | 0.560 | 253.3 Da LogP 2.33 TPSA 66.4 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCC(NC(=O)C2CCCCC2)CC1
|
| ZINC19225902 ZINC | 0.559 | 237.2 Da LogP 1.18 TPSA 57.6 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@@H]1CCCN1/C=C/C(=O)C(F)(F)F
|
| ZINC19225905 ZINC | 0.559 | 237.2 Da LogP 1.18 TPSA 57.6 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@H]1CCCN1/C=C/C(=O)C(F)(F)F
|
| ZINC33620149 ZINC | 0.559 | 237.2 Da LogP 1.18 TPSA 57.6 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@@H]1CCCN1/C=C\C(=O)C(F)(F)F
|
| ZINC13968104 ZINC | 0.556 | 282.3 Da LogP 0.02 TPSA 59.1 | ✓ Ro5 | ✓ Clean |
O=C([C@@H]1CCCO1)N1CCN(C(=O)[C@H]2CCCO2)CC1
|
| ZINC5898254 ZINC | 0.556 | 282.3 Da LogP 0.02 TPSA 59.1 | ✓ Ro5 | ✓ Clean |
O=C([C@H]1CCCO1)N1CCN(C(=O)[C@H]2CCCO2)CC1
|
| ZINC5898478 ZINC | 0.556 | 282.3 Da LogP 0.02 TPSA 59.1 | ✓ Ro5 | ✓ Clean |
O=C([C@@H]1CCCO1)N1CCN(C(=O)[C@@H]2CCCO2)CC1
|
| ZINC473792 ZINC | 0.552 | 225.3 Da LogP 2.39 TPSA 38.3 | ✓ Ro5 | ✓ Clean |
O=C(NC1CCCCCCC1)[C@H]1CCCO1
|
| ZINC473793 ZINC | 0.552 | 225.3 Da LogP 2.39 TPSA 38.3 | ✓ Ro5 | ✓ Clean |
O=C(NC1CCCCCCC1)[C@@H]1CCCO1
|
| ZINC476365 ZINC | 0.552 | 211.3 Da LogP 2.00 TPSA 38.3 | ✓ Ro5 | ✓ Clean |
O=C(NC1CCCCCC1)[C@H]1CCCO1
|
| ZINC476366 ZINC | 0.552 | 211.3 Da LogP 2.00 TPSA 38.3 | ✓ Ro5 | ✓ Clean |
O=C(NC1CCCCCC1)[C@@H]1CCCO1
|
| ZINC60121565 ZINC | 0.550 | 240.3 Da LogP 2.52 TPSA 74.6 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCC2(CC1)CCC(C(=O)O)CC2
|
| ZINC11891528 ZINC | 0.548 | 227.3 Da LogP 0.49 TPSA 66.8 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCN(C(=O)[C@@H]2CCCO2)CC1
|
| ZINC11891532 ZINC | 0.548 | 227.3 Da LogP 0.49 TPSA 66.8 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCN(C(=O)[C@H]2CCCO2)CC1
|
| ZINC153514 ZINC | 0.542 | 211.3 Da LogP 1.11 TPSA 57.6 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCN(C(=O)C2CCC2)CC1
|
| ZINC757066037 ZINC | 0.542 | 200.2 Da LogP 1.44 TPSA 63.6 | ✓ Ro5 | ✓ Clean |
COC(=O)[C@@H]1CCC[C@@H](C(=O)O)CC1
|
| ZINC757066044 ZINC | 0.542 | 200.2 Da LogP 1.44 TPSA 63.6 | ✓ Ro5 | ✓ Clean |
COC(=O)[C@@H]1CCC[C@H](C(=O)O)CC1
|
| ZINC757066048 ZINC | 0.542 | 200.2 Da LogP 1.44 TPSA 63.6 | ✓ Ro5 | ✓ Clean |
COC(=O)[C@H]1CCC[C@@H](C(=O)O)CC1
|
| ZINC757066049 ZINC | 0.542 | 200.2 Da LogP 1.44 TPSA 63.6 | ✓ Ro5 | ✓ Clean |
COC(=O)[C@H]1CCC[C@H](C(=O)O)CC1
|
| ZINC8727458 ZINC | 0.542 | 211.3 Da LogP 2.12 TPSA 40.5 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CCN(C2CCCCC2)CC1
|
| ZINC13153664 ZINC | 0.536 | 310.4 Da LogP 0.89 TPSA 76.7 | ✓ Ro5 | ✓ Clean |
O=C(NC1CCC(NC(=O)[C@H]2CCCO2)CC1)[C@@H]1CCCO1
|
| ZINC1616450 ZINC | 0.536 | 254.3 Da LogP -1.28 TPSA 82.3 | ✓ Ro5 | ✓ Clean |
O=C(NCCNC(=O)[C@@H]1CCCN1)[C@@H]1CCCN1
|
| ZINC17722834 ZINC | 0.536 | 256.3 Da LogP -0.42 TPSA 76.7 | ✓ Ro5 | ✓ Clean |
O=C(NCCNC(=O)[C@H]1CCCO1)[C@@H]1CCCO1
|
| ZINC376062 ZINC | 0.536 | 310.4 Da LogP 0.89 TPSA 76.7 | ✓ Ro5 | ✓ Clean |
O=C(NC1CCC(NC(=O)[C@H]2CCCO2)CC1)[C@H]1CCCO1
|
| ZINC376065 ZINC | 0.536 | 310.4 Da LogP 0.89 TPSA 76.7 | ✓ Ro5 | ✓ Clean |
O=C(NC1CCC(NC(=O)[C@@H]2CCCO2)CC1)[C@@H]1CCCO1
|
| ZINC5600257 ZINC | 0.536 | 254.3 Da LogP -1.28 TPSA 82.3 | ✓ Ro5 | ✓ Clean |
O=C(NCCNC(=O)[C@H]1CCCN1)[C@H]1CCCN1
|
| ZINC5898346 ZINC | 0.536 | 256.3 Da LogP -0.42 TPSA 76.7 | ✓ Ro5 | ✓ Clean |
O=C(NCCNC(=O)[C@H]1CCCO1)[C@H]1CCCO1
|
| ZINC5898556 ZINC | 0.536 | 256.3 Da LogP -0.42 TPSA 76.7 | ✓ Ro5 | ✓ Clean |
O=C(NCCNC(=O)[C@@H]1CCCO1)[C@@H]1CCCO1
|
| ZINC8655607 ZINC | 0.536 | 254.3 Da LogP -1.28 TPSA 82.3 | ✓ Ro5 | ✓ Clean |
O=C(NCCNC(=O)[C@H]1CCCN1)[C@@H]1CCCN1
|
| ZINC37586180 ZINC | 0.531 | 241.3 Da LogP 1.02 TPSA 66.8 | ✓ Ro5 | ✓ Clean |
O=C(O)CN(C(=O)[C@@H]1CCCO1)C1CCCC1
|
| ZINC4899613 ZINC | 0.531 | 212.2 Da LogP -0.19 TPSA 69.6 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@@H]1CCCN1C(=O)[C@@H]1CCCN1
|
| ZINC4974454 ZINC | 0.531 | 212.2 Da LogP -0.19 TPSA 69.6 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@H]1CCCN1C(=O)[C@H]1CCCN1
|
| ZINC4974455 ZINC | 0.531 | 212.2 Da LogP -0.19 TPSA 69.6 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@H]1CCCN1C(=O)[C@@H]1CCCN1
|
| ZINC4974456 ZINC | 0.531 | 212.2 Da LogP -0.19 TPSA 69.6 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@@H]1CCCN1C(=O)[C@H]1CCCN1
|
| ZINC757216905 ZINC | 0.531 | 212.3 Da LogP 0.44 TPSA 61.4 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@@H]1C[C@@H]([C@@H]2CCCNC2)CCN1
|
| ZINC757216906 ZINC | 0.531 | 212.3 Da LogP 0.44 TPSA 61.4 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@@H]1C[C@H]([C@@H]2CCCNC2)CCN1
|
| ZINC757216908 ZINC | 0.531 | 212.3 Da LogP 0.44 TPSA 61.4 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@@H]1C[C@@H]([C@H]2CCCNC2)CCN1
|
| ZINC757216910 ZINC | 0.531 | 212.3 Da LogP 0.44 TPSA 61.4 | ✓ Ro5 | ✓ Clean |
O=C(O)[C@@H]1C[C@H]([C@H]2CCCNC2)CCN1
|
| ZINC14806503 ZINC | 0.529 | 216.2 Da LogP 0.27 TPSA 111.9 | ✓ Ro5 | ✓ Clean |
O=C(O)C1CC(C(=O)O)CC(C(=O)O)C1
|
PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.
Cross-references
External database identifiers for this protein, its structures, ligands, and metabolic reactions.