Protein profile

VK055_2532

putative lipoprotein

Genome: KpATCC43816

Gene: AIK81129.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GN33
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Amino acids 77
Annotations 0
Features 19
PDB binders 0
Druggability 0.271

Overview

Basic information about this protein and its source genome.

Accession
VK055_2532
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK81129.1
Status
annotated
Amino acids
77
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
83.58

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.271
Structure A0A0H3GN33
Pocket Pocket 2
P2Rank
Structure A0A0H3GN33
Pocket No pockets
ColabFold model
FPocket 0.157 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 88 / 4744 genomes with a hit
Normalized 0.019

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

19 records
Show feature table
Start End DB Term Name
9 74 PANTHER PTHR37011 POT FAMILY PEPTIDE TRANSPORT PROTEIN-RELATED
9 74 InterPro IPR010305 Lipoprotein YgdI/YgdR-like
25 77 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 20 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
17 24 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
21 77 Gene3D G3DSA:2.30.30.100 -
5 16 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
1 4 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
5 24 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
23 75 SUPERFAMILY SSF50182 Sm-like ribonucleoproteins
23 75 InterPro IPR010920 LSM domain superfamily
7 74 NCBIfam NF033216 YgdI/YgdR family lipoprotein
7 74 InterPro IPR010305 Lipoprotein YgdI/YgdR-like
1 24 Phobius SIGNAL_PEPTIDE Signal peptide region
28 74 Pfam PF06004 Bacterial protein of unknown function (DUF903)
28 74 InterPro IPR047807 Lipoprotein YgdI/YgdR-like, SH3-like domain
1 22 ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile.
1 21 SignalP_EUK SignalP-noTM SignalP-noTM
1 25 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GN33
AlphaFold — — full sequence — Viewing
ColabFold VK055_2532
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.271
1 0.114
3 0.097