Protein profile

VK055_3370

phosphoglycerate transporter family protein

Genome: KpATCC43816

Gene: AIK81927.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GV73
Amino acids 430
Annotations 3
Features 52
PDB binders 1
Druggability 0.593

Overview

Basic information about this protein and its source genome.

Accession
VK055_3370
Gene
AIK81927.1
Status
annotated
Amino acids
430
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
35.294
Human E-value
5.86e-06
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
42.593
DEG E-value
2.34e-120
Localization
CytoplasmicMembrane
ColabFold pLDDT
87.24

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.593
Structure A0A0H3GV73
Pocket Pocket 17
P2Rank 0.96
Structure A0A0H3GV73
Pocket Pocket 1
ColabFold model
FPocket 0.931 · Pocket 23
P2Rank 0.905 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 56 / 4744 genomes with a hit
Normalized 0.012

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.

Sequence Features

Domain/signature hits from InterPro and related databases.

52 records
Show feature table
Start End DB Term Name
76 81 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
189 241 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
88 110 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
2 429 PIRSF PIRSF002808 Hexose_phosphate_transp
2 429 InterPro IPR000849 Sugar phosphate transporter
82 98 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
164 168 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
12 30 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
21 389 Pfam PF07690 Major Facilitator Superfamily
21 389 InterPro IPR011701 Major facilitator superfamily
8 204 FunFam G3DSA:1.20.1250.20:FF:000006 MFS transporter
425 430 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
369 392 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
13 30 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
261 279 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
53 75 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
404 424 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
123 141 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
338 362 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
104 122 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
22 405 NCBIfam TIGR00881 phosphoglycerate transporter protein PgtP
363 368 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
142 163 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
301 311 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
374 396 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
333 337 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
55 75 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
13 423 PANTHER PTHR11662 SOLUTE CARRIER FAMILY 17
242 263 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
242 260 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
99 103 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
169 188 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
307 329 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
339 361 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
8 426 SUPERFAMILY SSF103473 MFS general substrate transporter
8 426 InterPro IPR036259 MFS transporter superfamily
166 188 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
8 201 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
8 201 InterPro IPR036259 MFS transporter superfamily
312 332 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
31 54 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
280 300 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
234 429 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
234 429 InterPro IPR036259 MFS transporter superfamily
278 300 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
14 422 CDD cd17319 MFS_ExuT_GudP_like
393 403 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
401 423 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
17 427 ProSiteProfiles PS50850 Major facilitator superfamily (MFS) profile.
17 427 InterPro IPR020846 Major facilitator superfamily domain
23 423 NCBIfam TIGR00893 D-galactonate transporter

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GV73
AlphaFold full sequence Viewing
ColabFold VK055_3370
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
19 0.225
20 0.072
21 0.007

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 46.12 0.96
2 4.93 0.183
3 3.25 0.09
4 2.8 0.07
5 1.72 0.025

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

88 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
J0M J7QAK3 196.2 Da LogP -3.49 TPSA 138.5 1 viol. ✓ Clean C([C@H]([C@@H]([C@@H]([C@H](C(=O)O)O)O)O)O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.