Protein profile

VK055_3448

sugar (Glycoside-Pentoside-Hexuronide) transporter domain protein

Genome: KpATCC43816

Gene: AIK82004.1 gph5 Structure source: AlphaFold + ColabFold UniProt A0A0H3H4M0
Amino acids 464
Annotations 6
Features 49
PDB binders 2
Druggability 0.744

Overview

Basic information about this protein and its source genome.

Accession
VK055_3448
Gene
AIK82004.1 gph5
Status
annotated
Amino acids
464
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
30.247
Human E-value
4.49e-10
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
44.444
DEG E-value
2.03e-121
Localization
CytoplasmicMembrane
ColabFold pLDDT
88.08

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.744
Structure A0A0H3H4M0
Pocket Pocket 22
P2Rank 0.964
Structure A0A0H3H4M0
Pocket Pocket 1
ColabFold model
FPocket 0.726 · Pocket 21
P2Rank 0.972 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 54 / 4744 genomes with a hit
Normalized 0.011

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

6 GO

Gene Ontology (GO)

6
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0015293 Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy.
  • GO:0008643 The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are a group of organic compounds based of the general formula Cx(H2O)y.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0006814 The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Sequence Features

Domain/signature hits from InterPro and related databases.

49 records
Show feature table
Start End DB Term Name
180 202 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
293 315 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
19 424 Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains
19 424 InterPro IPR036259 MFS transporter superfamily
152 174 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
133 151 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
62 87 ProSitePatterns PS00872 Sodium:galactoside symporter family signature.
62 87 InterPro IPR018043 Sodium:galactoside symporter, conserved site
32 54 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
255 259 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
109 131 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
320 342 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
175 179 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
232 254 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
16 421 FunFam G3DSA:1.20.1250.20:FF:000045 Glycoside-pentoside-hexuronide family transporter
429 464 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
385 403 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
400 422 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
82 99 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
110 132 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
2 446 PANTHER PTHR11328 MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
2 446 InterPro IPR039672 Lactose permease-like
258 280 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
152 174 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
232 254 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
35 39 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
59 78 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
79 98 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
404 428 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
40 58 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
363 384 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
203 231 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
11 443 NCBIfam TIGR00792 glycoside-pentoside-hexuronide (GPH):cation symporter
11 443 InterPro IPR001927 Sodium:galactoside symporter
13 421 SUPERFAMILY SSF103473 MFS general substrate transporter
13 421 InterPro IPR036259 MFS transporter superfamily
363 385 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
11 431 CDD cd17332 MFS_MelB_like
314 318 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
260 283 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
99 109 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
13 427 Pfam PF13347 MFS/sugar transport protein
343 362 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
12 34 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
284 294 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
319 342 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
295 313 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
179 201 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3H4M0
AlphaFold full sequence Viewing
ColabFold VK055_3448
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
7 0.702
29 0.658
30 0.617
15 0.327

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 31.99 0.941
2 4.51 0.193
3 3.71 0.141
4 1.5 0.021

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

52 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
9PG P30878 301.3 Da LogP -1.23 TPSA 142.5 ✓ Ro5 ✓ Clean c1cc(ccc1[N+](=O)[O-])O[C@@H]2[C@@H]([C@H]([C@H…
LMO P30878 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.