Protein profile

VK055_4798

yfcL family protein

Genome: KpATCC43816

Gene: AIK83325.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GVT4
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Amino acids 93
Annotations 0
Features 2
PDB binders 0
Druggability 0.669

Overview

Basic information about this protein and its source genome.

Accession
VK055_4798
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK83325.1
Status
annotated
Amino acids
93
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
Y
DEG identity (%)
52.809
DEG E-value
8.769999999999999e-25
Localization
Unknown
ColabFold pLDDT
96.18

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.669
Structure A0A0H3GVT4
Pocket Pocket 2
P2Rank 0.005
Structure A0A0H3GVT4
Pocket Pocket 1
ColabFold model
FPocket 0.454 · Pocket 1
P2Rank 0.006 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 122 / 4744 genomes with a hit
Normalized 0.026

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

2 records
Show feature table
Start End DB Term Name
4 87 Pfam PF08891 YfcL protein
4 87 InterPro IPR014987 Uncharacterised protein family YfcL

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GVT4
AlphaFold — — full sequence — Viewing
ColabFold VK055_4798
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.669
3 0.098
6 0.0
9 0.0

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 1.01 0.005