Overview
Basic information about this protein and its source genome.
- Accession
- VK055_4980
- Gene
- AIK83506.1 rbtD
- Status
- annotated
- Amino acids
- 242
- Structure source
- AlphaFold + ColabFold
Target profile
Computed evidence for target prioritization.
- Human off-target
- hit
- Human identity (%)
- 51.064
- Human E-value
- 1.59e-06
- Gut microbiome off-target
- hit
- Essential (DEG)
- N
- DEG identity (%)
- 34.518
- Localization
- Cytoplasmic
- ColabFold pLDDT
- 94.43
Selected Druggability evidence
AlphaFold / UniProt modelSelected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.
Sequence
Primary amino-acid sequence viewer.
Functional Annotations
Enzyme classification and Gene Ontology terms linked to this protein.
Gene Ontology (GO)
2- GO:0016491 Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
- GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
Sequence Features
Domain/signature hits from InterPro and related databases.
Show feature table
| Start | End | DB | Term | Name |
|---|---|---|---|---|
| 8 | 194 | Pfam | PF00106 | short chain dehydrogenase |
| 8 | 194 | InterPro | IPR002347 | Short-chain dehydrogenase/reductase SDR |
| 140 | 168 | ProSitePatterns | PS00061 | Short-chain dehydrogenases/reductases family signature. |
| 140 | 168 | InterPro | IPR020904 | Short-chain dehydrogenase/reductase, conserved site |
| 1 | 238 | FunFam | G3DSA:3.40.50.720:FF:000084 | Short-chain dehydrogenase reductase |
| 1 | 227 | PANTHER | PTHR44196 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
| 10 | 235 | CDD | cd05233 | SDR_c |
| 1 | 234 | SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains |
| 1 | 234 | InterPro | IPR036291 | NAD(P)-binding domain superfamily |
| 174 | 191 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature |
| 174 | 191 | InterPro | IPR002347 | Short-chain dehydrogenase/reductase SDR |
| 153 | 172 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature |
| 153 | 172 | InterPro | IPR002347 | Short-chain dehydrogenase/reductase SDR |
| 80 | 91 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature |
| 80 | 91 | InterPro | IPR002347 | Short-chain dehydrogenase/reductase SDR |
| 127 | 143 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature |
| 127 | 143 | InterPro | IPR002347 | Short-chain dehydrogenase/reductase SDR |
| 204 | 224 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature |
| 204 | 224 | InterPro | IPR002347 | Short-chain dehydrogenase/reductase SDR |
| 9 | 26 | PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature |
| 9 | 26 | InterPro | IPR002347 | Short-chain dehydrogenase/reductase SDR |
| 2 | 242 | Gene3D | G3DSA:3.40.50.720 | - |
3D Structure
Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.
Loading 3D structure...
Structural evidence
0 + 2Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.
| Entry | Method | Resolution | Chain | Coverage | Links | Status |
|---|---|---|---|---|---|---|
|
AlphaFold
AF_A0A0H3H0P6
|
AlphaFold | — | — | full sequence | — | Viewing |
|
ColabFold
VK055_4980
|
ColabFold | — | — | full sequence | — | Loaded |
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer
Pockets (FPOCKET)
Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).
| FPOCKET | Sticks | Spheres | Surfaces | Druggability | Labels | Zoom | Positions |
|---|---|---|---|---|---|---|---|
| 12 | 0.636 | ||||||
| 4 | 0.001 | ||||||
| 10 | 0.001 |
Pockets (P2RANK)
Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).
| P2RANK | Sticks | Spheres | Surfaces | Score | Probability | Labels | Zoom | Positions |
|---|---|---|---|---|---|---|---|---|
| 1 | 33.16 | 0.92 | ||||||
| 2 | 1.95 | 0.034 | ||||||
| 3 | 1.05 | 0.006 |
Pockets (FPOCKET)
Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).
| FPOCKET | Sticks | Spheres | Surfaces | Druggability | Labels | Zoom | Positions |
|---|---|---|---|---|---|---|---|
| 1 | 0.628 | ||||||
| 10 | 0.01 | ||||||
| 2 | 0.001 |
Pockets (P2RANK)
Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).
| P2RANK | Sticks | Spheres | Surfaces | Score | Probability | Labels | Zoom | Positions |
|---|---|---|---|---|---|---|---|---|
| 1 | 31.65 | 0.911 | ||||||
| 2 | 2.69 | 0.065 | ||||||
| 3 | 1.56 | 0.019 |
Ligand evidence
Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.
Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.
No PDB structure with a co-crystallized ligand found for this exact protein.
Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.
| Ligand | Source crystal | UniProt (homolog) | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|---|
| A6O | C0IR58 | 314.4 Da LogP 3.93 TPSA 46.5 | ✓ Ro5 | ✓ Clean |
CC[C@]1([C@H](CCC1=O)O)C/C=C/2\CCCc3c2ccc(c3)OC
|
|
| AAE | A0A1E3M3N6 | 102.1 Da LogP 0.05 TPSA 54.4 | ✓ Ro5 | ✓ Clean |
CC(=O)CC(=O)O
|
|
| B3P | B3R6T4 | 282.3 Da LogP -4.01 TPSA 145.4 | 1 viol. | ✓ Clean |
C(CNC(CO)(CO)CO)CNC(CO)(CO)CO
|
|
| F3V | A0QP46 | 73.1 Da LogP -0.47 TPSA 43.1 | ✓ Ro5 | ✓ Clean |
CC(=O)CN
|
|
| HBR | H9XP47 | 88.1 Da LogP -0.04 TPSA 37.3 | ✓ Ro5 | ✓ Clean |
C[C@H](C(=O)C)O
|
|
| QT8 | A0A1E3M3N6 | 116.1 Da LogP 0.44 TPSA 54.4 | ✓ Ro5 | ✓ Clean |
CCC(=O)CC(=O)O
|
|
| TAM | C0IR58 | 163.2 Da LogP -1.17 TPSA 86.7 | ✓ Ro5 | ✓ Clean |
C(CO)C(CCO)(CCO)N
|
Experimental bioactivity from ChEMBL measured directly on this protein. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL bioactivity data found for this exact protein.
Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL hits found through similar proteins.
Proposed virtual-screening candidates from ZINC. Score = Tanimoto similarity to a known binder (0–1; higher = more similar).
| Ligand | Tanimoto | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|
| ZINC4521259 | 1.000 | 282.3 Da LogP -4.01 TPSA 145.4 | 1 viol. | ✓ Clean |
OCC(CO)(CO)NCCCNC(CO)(CO)CO
|
| ZINC1845623 | 0.673 | 312.4 Da LogP 4.13 TPSA 43.4 | ✓ Ro5 | ✓ Clean |
CCC1(C/C=C2\CCCc3cc(OC)ccc32)C(=O)CCC1=O
|
| ZINC1845624 | 0.673 | 312.4 Da LogP 4.13 TPSA 43.4 | ✓ Ro5 | ✓ Clean |
CCC1(C/C=C2/CCCc3cc(OC)ccc32)C(=O)CCC1=O
|
| ZINC115591405 | 0.636 | 373.6 Da LogP 4.55 TPSA 72.7 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCCCCCNC(CO)(CO)CO
|
| ZINC115591837 | 0.636 | 317.5 Da LogP 2.99 TPSA 72.7 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCNC(CO)(CO)CO
|
| ZINC143575268 | 0.636 | 289.5 Da LogP 2.21 TPSA 72.7 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCNC(CO)(CO)CO
|
| ZINC2322313 | 0.636 | 233.4 Da LogP 0.65 TPSA 72.7 | ✓ Ro5 | ✓ Clean |
CCCCCCCCNC(CO)(CO)CO
|
| ZINC97996983 | 0.636 | 345.6 Da LogP 3.77 TPSA 72.7 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCCCNC(CO)(CO)CO
|
| ZINC2575038 | 0.625 | 205.3 Da LogP 0.00 TPSA 86.7 | ✓ Ro5 | ✓ Clean |
NC(CCCO)(CCCO)CCCO
|
| ZINC1611594 | 0.583 | 243.3 Da LogP -2.43 TPSA 127.1 | ✓ Ro5 | ✓ Clean |
O=S(=O)(O)CCCNC(CO)(CO)CO
|
| ZINC5273895 | 0.583 | 257.3 Da LogP -2.04 TPSA 127.1 | ✓ Ro5 | ✓ Clean |
O=S(=O)(O)CCCCNC(CO)(CO)CO
|
| ZINC1662285 | 0.544 | 284.4 Da LogP 3.35 TPSA 43.4 | ✓ Ro5 | ✓ Clean |
COc1ccc2c(c1)CC/C2=C\CC1(C)C(=O)CCC1=O
|
| ZINC17380200 | 0.544 | 284.4 Da LogP 3.35 TPSA 43.4 | ✓ Ro5 | ✓ Clean |
COc1ccc2c(c1)CC/C2=C/CC1(C)C(=O)CCC1=O
|
| ZINC1530141 | 0.500 | 229.3 Da LogP -2.82 TPSA 127.1 | ✓ Ro5 | ✓ Clean |
O=S(=O)(O)CCNC(CO)(CO)CO
|
PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.