Protein profile

VK055_5174

phage major capsid protein, HK97 family

Genome: KpATCC43816

Gene: AIK83695.1 Structure source: AlphaFold + ColabFold UniProt A0A486P229
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Amino acids 387
Annotations 0
Features 9
PDB binders 0
Druggability 0.936

Overview

Basic information about this protein and its source genome.

Accession
VK055_5174
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK83695.1
Status
annotated
Amino acids
387
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
Unknown
ColabFold pLDDT
80.45

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.936
Structure A0A486P229
Pocket Pocket 16
P2Rank 0.039
Structure A0A486P229
Pocket Pocket 1
ColabFold model
FPocket 0.663 · Pocket 6
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 7 / 4744 genomes with a hit
Normalized 0.001

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

9 records
Show feature table
Start End DB Term Name
108 382 SUPERFAMILY SSF56563 Major capsid protein gp5
4 31 Coils Coil Coil
240 377 Gene3D G3DSA:3.30.2320.10 hypothetical protein PF0899 domain
36 63 Coils Coil Coil
7 379 NCBIfam TIGR01554 phage major capsid protein
7 379 InterPro IPR024455 Phage capsid
138 371 Gene3D G3DSA:3.30.2400.10 Major capsid protein gp5
113 380 Pfam PF05065 Phage capsid family
113 380 InterPro IPR024455 Phage capsid

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A486P229
AlphaFold — — full sequence — Viewing
ColabFold VK055_5174
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
16 0.936