Protein profile

VK055_5175

phage gp6-like head-tail connector family protein

Genome: KpATCC43816

Gene: AIK83696.1 Structure source: AlphaFold + ColabFold UniProt A0A2L0KFN3

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Amino acids 108

Annotations 0

Features 9

PDB binders 0

Druggability 0.209

Overview

Basic information about this protein and its source genome.

Accession: VK055_5175
Assembly: Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene: AIK83696.1
Status: annotated
Amino acids: 108
Structure source: AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target: No hit
Human identity (%): 0.0
Gut microbiome off-target: No hit
Essential (DEG): N
DEG identity (%): 0.0
Localization: Unknown
ColabFold pLDDT: 92.6

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.209

Structure A0A2L0KFN3

Pocket Pocket 5

P2Rank 0.025

Structure A0A2L0KFN3

Pocket Pocket 1

ColabFold model

FPocket 0.541 · Pocket 3

P2Rank 0.01 · Pocket 1

Core conservation Accessory gene

Roary accessory

CoreCruncher accessory

Gut microbiome 0 / 4744 genomes with a hit

Normalized 0

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

9 records

Show feature table

Start	End	DB	Term	Name
82	108	Phobius	CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
7	108	Gene3D	G3DSA:1.10.3230.30	-
1	61	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
62	81	Phobius	TRANSMEMBRANE	Region of a membrane-bound protein predicted to be embedded in the membrane.
8	104	NCBIfam	TIGR01560	head-tail connector protein
8	104	InterPro	IPR006450	Phage HK97 gp6-like
8	105	CDD	cd08054	gp6
6	101	Pfam	PF05135	Phage gp6-like head-tail connector protein
6	101	InterPro	IPR021146	Phage gp6-like head-tail connector protein

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry	Method	Resolution	Chain	Coverage	Links	Status
AlphaFold AF_A0A2L0KFN3	AlphaFold	—	—	full sequence	—	Viewing
ColabFold VK055_5175	ColabFold	—	—	full sequence	—	Loaded

Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET	Sticks	Spheres	Surfaces	Druggability	Labels	Zoom	Positions
5				0.209

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET	Sticks	Spheres	Surfaces	Druggability	Labels	Zoom	Positions
3				0.541