Protein profile

VK055_5182

phage tail tape measure protein, lambda family

Genome: KpATCC43816

Gene: AIK83703.1 Structure source: AlphaFold + ColabFold UniProt A0A486MH00
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Amino acids 815
Annotations 0
Features 9
PDB binders 0
Druggability 0.973

Overview

Basic information about this protein and its source genome.

Accession
VK055_5182
Assembly
Klebsiella pneumoniae subsp. pneumoniae strain ATCC 43816 KPPR1, complete genome
Gene
AIK83703.1
Status
annotated
Amino acids
815
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
OuterMembrane
ColabFold pLDDT
58.82

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.973
Structure A0A486MH00
Pocket Pocket 71
P2Rank 0.066
Structure A0A486MH00
Pocket Pocket 1
ColabFold model
FPocket 0.839 · Pocket 73
P2Rank 0.031 · Pocket 1
Core conservation Accessory gene
Roary accessory
CoreCruncher accessory
Gut microbiome 3 / 4744 genomes with a hit
Normalized 0.001

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

No GO or EC annotations are currently loaded for this protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

9 records
Show feature table
Start End DB Term Name
220 240 Coils Coil Coil
46 68 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
355 375 Coils Coil Coil
442 700 NCBIfam TIGR01541 phage tail tape measure protein
442 700 InterPro IPR006431 Bacteriophage tail tape measure, C-terminal
555 575 Coils Coil Coil
586 658 Pfam PF09718 Lambda phage tail tape-measure protein (Tape_meas_lam_C)
586 658 InterPro IPR006431 Bacteriophage tail tape measure, C-terminal
456 490 Coils Coil Coil

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

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Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A486MH00
AlphaFold — — full sequence — Viewing
ColabFold VK055_5182
ColabFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
71 0.973
72 0.807

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 2.39 0.063
2 1.31 0.014
3 0.82 0.003