Protein profile

KP13_03150

Multidrug resistance protein mdtC

Genome: KpKP13

Gene: mdtC AHE43634.1 Structure source: AlphaFold + ColabFold UniProt A0A0H3GVW5
Amino acids 1025
Annotations 5
Features 84
PDB binders 33
Druggability 0.844

Overview

Basic information about this protein and its source genome.

Accession
KP13_03150
Gene
mdtC AHE43634.1
Status
annotated
Amino acids
1025
Structure source
AlphaFold + ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Human identity (%)
0.0
Gut microbiome off-target
hit
Essential (DEG)
N
DEG identity (%)
0.0
Localization
CytoplasmicMembrane
ColabFold pLDDT
89.88

Selected Druggability evidence

AlphaFold / UniProt model

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.844
Structure A0A0H3GVW5
Pocket Pocket 54
P2Rank 0.683
Structure A0A0H3GVW5
Pocket Pocket 1
ColabFold model
FPocket 0.776 · Pocket 66
P2Rank 0.574 · Pocket 1
Core conservation Conserved core gene
Roary core
CoreCruncher core
Gut microbiome 156 / 4744 genomes with a hit
Normalized 0.033

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

5 GO

Gene Ontology (GO)

5
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0042910 Enables the directed movement of a xenobiotic from one side of a membrane to the other. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.

Sequence Features

Domain/signature hits from InterPro and related databases.

84 records
Show feature table
Start End DB Term Name
180 272 FunFam G3DSA:3.30.2090.10:FF:000005 Multidrug resistance protein MdtC
953 970 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 1015 PANTHER PTHR32063 -
1 1015 InterPro IPR001036 Acriflavin resistance protein
452 462 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
40 800 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
528 547 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
971 981 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
463 485 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
136 324 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
704 792 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
704 792 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
135 325 Gene3D G3DSA:3.30.70.1320 Multidrug efflux transporter AcrB pore domain like
985 1007 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
411 430 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
10 501 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
918 952 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
663 834 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
40 137 FunFam G3DSA:3.30.70.1430:FF:000001 Efflux pump membrane transporter
434 456 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
896 900 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
385 389 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
360 384 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
872 877 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
336 353 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
853 875 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
853 871 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1009 1025 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
502 1006 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
291 490 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
1 1024 Hamap MF_01424 Multidrug resistance protein MdtC [mdtC].
1 1024 InterPro IPR023931 Multidrug resistance protein MdtC
895 917 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
491 527 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
555 650 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
183 265 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
183 265 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
354 359 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
33 335 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
12 32 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
390 410 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
560 653 FunFam G3DSA:3.30.70.1430:FF:000004 Multidrug resistance protein MdtC
901 917 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
7 29 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
528 545 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
878 895 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
336 353 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
307 502 FunFam G3DSA:1.20.1640.10:FF:000001 Efflux pump membrane transporter
40 135 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
431 451 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
704 792 FunFam G3DSA:3.30.2090.10:FF:000004 Multidrug resistance protein MdtC
560 653 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
546 852 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
360 382 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
180 272 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
180 272 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
982 1008 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
948 970 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
811 1010 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
654 852 Gene3D G3DSA:3.30.70.1440 Multidrug efflux transporter AcrB pore domain
463 490 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
357 378 PRINTS PR00702 Acriflavin resistance protein family signature
357 378 InterPro IPR001036 Acriflavin resistance protein
330 353 PRINTS PR00702 Acriflavin resistance protein family signature
330 353 InterPro IPR001036 Acriflavin resistance protein
463 486 PRINTS PR00702 Acriflavin resistance protein family signature
463 486 InterPro IPR001036 Acriflavin resistance protein
438 461 PRINTS PR00702 Acriflavin resistance protein family signature
438 461 InterPro IPR001036 Acriflavin resistance protein
385 409 PRINTS PR00702 Acriflavin resistance protein family signature
385 409 InterPro IPR001036 Acriflavin resistance protein
605 619 PRINTS PR00702 Acriflavin resistance protein family signature
605 619 InterPro IPR001036 Acriflavin resistance protein
38 56 PRINTS PR00702 Acriflavin resistance protein family signature
38 56 InterPro IPR001036 Acriflavin resistance protein
542 559 PRINTS PR00702 Acriflavin resistance protein family signature
542 559 InterPro IPR001036 Acriflavin resistance protein
10 34 PRINTS PR00702 Acriflavin resistance protein family signature
10 34 InterPro IPR001036 Acriflavin resistance protein
4 1008 Pfam PF00873 AcrB/AcrD/AcrF family
4 1008 InterPro IPR001036 Acriflavin resistance protein
703 785 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
703 785 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 2

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold AF_A0A0H3GVW5
AlphaFold full sequence Viewing
ColabFold KP13_03150
ColabFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
54 0.844
3 0.466
1 0.433
35 0.201

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 7.84 0.416
2 5.2 0.241
3 5.14 0.237
4 5.02 0.228
5 3.92 0.155

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

136 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
3PE Q2FD94 748.1 Da LogP 12.06 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC…
3YI P31224 725.8 Da LogP 4.57 TPSA 218.4 3 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O/C=C/[C@@H]([C@H]([C…
5QF P31224 526.7 Da LogP 3.92 TPSA 80.1 1 viol. ✓ Clean CC1(Cc2c(c(nc(c2C#N)SCCc3ccc(c(c3)OC)OC)N4CCN(C…
8K6 P31224 254.5 Da LogP 7.27 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCCCCC
AIC P31224 349.4 Da LogP 0.32 TPSA 112.7 ✓ Ro5 ✓ Clean CC1([C@@H](N2[C@H](S1)[C@@H](C2=O)NC(=O)[C@@H](…
AV0 P52002 1005.2 Da LogP -1.68 TPSA 357.1 3 viol. ✓ Clean CCCCCCCCCCC(CCCCCCCCCC)(CO[C@H]1[C@@H]([C@H]([C…
C14 P31224 198.4 Da LogP 5.71 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCC
D10 P31224 142.3 Da LogP 4.15 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCCC
D12 P31224 170.3 Da LogP 4.93 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCCCCC
DD9 P31224 128.3 Da LogP 3.76 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCCC
DDQ P31224 201.4 Da LogP 3.70 TPSA 23.1 ✓ Ro5 ✓ Clean CCCCCCCCCC[N+](C)(C)[O-]
DDR P31224 400.6 Da LogP 5.72 TPSA 72.8 1 viol. ✓ Clean CCCCCCCCCC(=O)OC[C@H](CO)OC(=O)CCCCCCCCC
DM2 P31224 543.5 Da LogP 0.00 TPSA 206.1 3 viol. Alert C[C@H]1[C@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3…
ERY P31224 733.9 Da LogP 1.79 TPSA 193.9 2 viol. ✓ Clean CC[C@@H]1[C@@]([C@@H]([C@H](C(=O)[C@@H](C[C@@](…
ET Q2FD70 314.4 Da LogP 4.13 TPSA 55.9 ✓ Ro5 Alert CC[n+]1c2cc(ccc2c3ccc(cc3c1c4ccccc4)N)N
ETE P31224 208.3 Da LogP -0.33 TPSA 57.2 ✓ Ro5 ✓ Clean COCCOCCOCCOCCO
FUA P31224 516.7 Da LogP 5.67 TPSA 104.1 2 viol. ✓ Clean C[C@H]1[C@@H]2CC[C@]3([C@H]([C@]2(CC[C@H]1O)C)[…
HEX P31224 86.2 Da LogP 2.59 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCC
LMT P31224 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1…
LMU P31224 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O…
LPX P31224 453.6 Da LogP 4.46 TPSA 128.3 ✓ Ro5 ✓ Clean CCCCCCCCCCCCCCCC(=O)OC[C@@H](CO[P@](=O)(O)OCCN)O
MIY P31224 457.5 Da LogP 0.19 TPSA 164.6 ✓ Ro5 ✓ Clean CN(C)c1ccc(c2c1C[C@H]3C[C@H]4[C@@H](C(=C(C(=O)[…
MYS P31224 212.4 Da LogP 6.10 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCC
OCT P31224 114.2 Da LogP 3.37 TPSA 0.0 ✓ Ro5 ✓ Clean CCCCCCCC
P3G P31224 250.3 Da LogP 1.11 TPSA 46.2 ✓ Ro5 ✓ Clean CCOCCOCCOCCOCCOCC
P9D P52002 693.8 Da LogP 0.91 TPSA 212.5 2 viol. ✓ Clean CC(C)(C)c1csc(n1)NC(=O)C2=CC3=NC(=C(C(=O)N3C=C2…
PTY Q2FD70 734.1 Da LogP 11.67 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCCCCC…
PUY P31224 471.5 Da LogP -0.79 TPSA 160.9 1 viol. ✓ Clean CN(C)c1c2c(ncn1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H]…
R16 P31224 226.4 Da LogP 6.49 TPSA 0.0 1 viol. ✓ Clean CCCCCCCCCCCCCCCC
RBT P31224 847.0 Da LogP 4.62 TPSA 205.5 2 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
RFP P31224 823.0 Da LogP 4.34 TPSA 220.1 3 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
XPE P31224 458.5 Da LogP -0.88 TPSA 123.5 1 viol. ✓ Clean C(COCCOCCOCCOCCOCCOCCOCCOCCOCCO)O
YQM Q2FD94 558.6 Da LogP 0.14 TPSA 193.7 2 viol. ✓ Clean CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(cc(c(c4C(=C3C(=O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.