Binder profile

ZINC5297554

Virtual-screening candidate from ZINC.

Bound to: PA2163 — 4-alpha-glucanotransferase

Via homolog UniProt Q8NNA7 C16H35NO3
Tanimoto 0.50
Mol. weight 289.46 Da
Permeability High
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
ZINC5297554
UniProt (similar protein)
Q8NNA7
Tanimoto
0.500
Target protein
PA2163

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 289.46 Da
LogP (Crippen) 2.16
H-bond donors 3
H-bond acceptors 4
TPSA 63.93 Ų
Rotatable bonds 14
Aromatic rings 0 / 0
Heavy atoms 20
Fraction sp³ C 1.00
Formula C16H35NO3

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy High

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

Lipinski's Rule of Five Pass 0 violations
  • MW ≤ 500 Da 289.5
  • LogP ≤ 5 2.16
  • H-bond donors ≤ 5 3
  • H-bond acceptors ≤ 10 4
Veber's rules Fail
  • Rotatable bonds ≤ 10 14
  • TPSA ≤ 140 Ų 63.9
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
CCCCCCN(CCCCCC)C(CO)(CO)CO
InChI 
InChI=1S/C16H35NO3/c1-3-5-7-9-11-17(12-10-8-6-4-2)16(13-18,14-19)15-20/h18-20H,3-15H2,1-2H3
InChIKey 
IOFZZVMTSGENRE-UHFFFAOYSA-N

Provenance

Annotation context from LigQ_2, the internal TPW step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Query
BTB
Homolog
Q8NNA7

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other binders for this protein

Quick navigation to other ligands bound to PA2163.

PDB 3

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ZINC 12

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)