Ligand profile

ZINC8391847

Virtual-screening candidate from ZINC.

Bound to: VK055_5034 — UDP-galactopyranose mutase

Via homolog UniProt Q6NER4 Formula C₁₇H₁₄N₄O₂S₂
Tanimoto 0.72
Mol. weight 370.46 Da
Permeability High
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
ZINC8391847
UniProt (similar protein)
Q6NER4
Tanimoto
0.719
Target protein
VK055_5034

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 370.46 Da
LogP (Crippen) 3.52
H-bond donors 1
H-bond acceptors 7
TPSA 80.37 Ų
Rotatable bonds 4
Aromatic rings 3 / 4
Heavy atoms 25
Fraction sp³ C 0.18
Formula C₁₇H₁₄N₄O₂S₂

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy High

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 80.4
  • −1 ≤ LogP ≤ 5 3.52
Lipinski's Rule of Five Pass 0 violations
  • MW ≤ 500 Da 370.5
  • LogP ≤ 5 3.52
  • H-bond donors ≤ 5 1
  • H-bond acceptors ≤ 10 7
Veber's rules Pass
  • Rotatable bonds ≤ 10 4
  • TPSA ≤ 140 Ų 80.4
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
Cc1ccc(-c2nnc3n2N=C(c2cccs2)[C@H](CC(=O)O)S3)cc1
InChI 
InChI=1S/C17H14N4O2S2/c1-10-4-6-11(7-5-10)16-18-19-17-21(16)20-15(12-3-2-8-24-12)13(25-17)9-14(22)23/h2-8,13H,9H2,1H3,(H,22,23)/t13-/m0/s1
InChIKey 
ZXMMFWWDIMGSEB-ZDUSSCGKSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Query
40K
Homolog
Q6NER4

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to VK055_5034.

PDB 8

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ZINC 49

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)