Ligand profile

CHEMBL5942857

Bioactivity hit from ChEMBL on a similar protein.

Bound to: KP13_00717 — Peptidyl-prolyl cis-trans isomerase A

Via homolog UniProt P62937 Formula C₆₈H₁₂₃N₁₃O₁₂
pchembl 9.22 ~0.6 nM
Mol. weight 1314.81 Da
Permeability Check
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL5942857
UniProt (similar protein)
P62937
pchembl
9.220 (~0.6 nM)
Target protein
KP13_00717

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 1314.81 Da
LogP (Crippen) 2.88
H-bond donors 5
H-bond acceptors 14
TPSA 285.28 Ų
Rotatable bonds 17
Aromatic rings 0 / 2
Heavy atoms 93
Fraction sp³ C 0.81
Formula C₆₈H₁₂₃N₁₃O₁₂

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 285.3
  • −1 ≤ LogP ≤ 5 2.88
Lipinski's Rule of Five Fail 2 violations
  • MW ≤ 500 Da 1314.8
  • LogP ≤ 5 2.88
  • H-bond donors ≤ 5 5
  • H-bond acceptors ≤ 10 14
Veber's rules Fail
  • Rotatable bonds ≤ 10 17
  • TPSA ≤ 140 Ų 285.3
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
C/C=C/C[C@@H](C)[C@@H](O)[C@H]1C(=O)N[C@@H](CC)C(=O)N(C)[C@H](C)C(=O)N(C)[C@@H]([C@@H](C)CN2CCN(CC)CC2)C(=O)N[C@@H](C(C)C)C(=O)N(C)[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@H](C)C(=O)N(C)[C@@H](CC(C)C)C(=O)N(C)[C@@H](CC(C)C)C(=O)N(C)[C@@H](C(C)C)C(=O)N1C
InChI 
InChI=1S/C68H123N13O12/c1-26-29-30-44(14)57(82)56-61(86)71-49(27-2)64(89)73(19)48(18)63(88)78(24)55(45(15)38-81-33-31-80(28-3)32-34-81)60(85)72-53(42(10)11)67(92)74(20)50(35-39(4)5)59(84)69-46(16)58(83)70-47(17)62(87)75(21)51(36-40(6)7)65(90)76(22)52(37-41(8)9)66(91)77(23)54(43(12)13)68(93)79(56)25/h26,29,39-57,82H,27-28,30-38H2,1-25H3,(H,69,84)(H,70,83)(H,71,86)(H,72,85)/b29-26+/t44-,45+,46+,47-,48-,49+,50+,51+,52+,53+,54+,55+,56+,57-/m1/s1
InChIKey 
KKRCAFQEQPRWFR-DZPMCOADSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Activity
546542
Binding sites
PF00160

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to KP13_00717.

PDB 40

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 99

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)