Ligand profile

CHEMBL5798116

Bioactivity hit from ChEMBL on a similar protein.

Bound to: KP13_00717 — Peptidyl-prolyl cis-trans isomerase A

Via homolog UniProt P62937 Formula C₆₆H₁₁₇N₁₁O₁₄
pchembl 9.00 ~1.0 nM
Mol. weight 1288.72 Da
Permeability Check
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL5798116
UniProt (similar protein)
P62937
pchembl
9.000 (~1.0 nM)
Target protein
KP13_00717

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 1288.72 Da
LogP (Crippen) 3.05
H-bond donors 5
H-bond acceptors 14
TPSA 297.26 Ų
Rotatable bonds 17
Aromatic rings 0 / 2
Heavy atoms 91
Fraction sp³ C 0.80
Formula C₆₆H₁₁₇N₁₁O₁₄

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 297.3
  • −1 ≤ LogP ≤ 5 3.05
Lipinski's Rule of Five Fail 2 violations
  • MW ≤ 500 Da 1288.7
  • LogP ≤ 5 3.05
  • H-bond donors ≤ 5 5
  • H-bond acceptors ≤ 10 14
Veber's rules Fail
  • Rotatable bonds ≤ 10 17
  • TPSA ≤ 140 Ų 297.3
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
C/C=C/C[C@@H](C)[C@@H](O)C1C(=O)N[C@@H](CC)C(=O)N(C)[C@H](C)C(=O)N(C)[C@@H]([C@H](C)CO[C@H]2CCOC2)C(=O)N[C@@H](C(C)C)C(=O)N(C)[C@@H](CC(C)C)C(=O)N[C@@H](C)C(=O)N[C@H](C)C(=O)N(C)[C@@H](CC(C)C)C(=O)N(C)[C@@H](CC(C)C)C(=O)N(C)[C@@H](C(C)C)C(=O)N1C
InChI 
InChI=1S/C66H117N11O14/c1-25-27-28-41(13)55(78)54-59(82)69-47(26-2)62(85)71(18)45(17)61(84)76(23)53(42(14)34-91-46-29-30-90-35-46)58(81)70-51(39(9)10)65(88)72(19)48(31-36(3)4)57(80)67-43(15)56(79)68-44(16)60(83)73(20)49(32-37(5)6)63(86)74(21)50(33-38(7)8)64(87)75(22)52(40(11)12)66(89)77(54)24/h25,27,36-55,78H,26,28-35H2,1-24H3,(H,67,80)(H,68,79)(H,69,82)(H,70,81)/b27-25+/t41-,42-,43+,44-,45-,46+,47+,48+,49+,50+,51+,52+,53+,54?,55-/m1/s1
InChIKey 
VCXFKFGXXMZEFL-OWTIOULESA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Activity
546534
Binding sites
PF00160

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to KP13_00717.

PDB 40

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 99

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)