Ligand profile

CHEMBL4483483

Bioactivity hit from ChEMBL on a similar protein.

Bound to: KP13_02169 — D-3-phosphoglycerate dehydrogenase

Via homolog UniProt O43175 Formula C₂₅H₂₇ClN₂O₅S
pchembl 8.22 ~6.0 nM
Mol. weight 503.02 Da
Permeability Check
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL4483483
UniProt (similar protein)
O43175
pchembl
8.220 (~6.0 nM)
Target protein
KP13_02169

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 503.02 Da
LogP (Crippen) 4.80
H-bond donors 2
H-bond acceptors 5
TPSA 105.47 Ų
Rotatable bonds 6
Aromatic rings 3 / 4
Heavy atoms 34
Fraction sp³ C 0.36
Formula C₂₅H₂₇ClN₂O₅S

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 105.5
  • −1 ≤ LogP ≤ 5 4.80
Lipinski's Rule of Five Pass 1 violation
  • MW ≤ 500 Da 503.0
  • LogP ≤ 5 4.80
  • H-bond donors ≤ 5 2
  • H-bond acceptors ≤ 10 5
Veber's rules Pass
  • Rotatable bonds ≤ 10 6
  • TPSA ≤ 140 Ų 105.5
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
Cc1cc(Cl)c2cc(C(=O)N[C@H](C)c3ccc(S(=O)(=O)C4(C(=O)O)CCCC4)cc3)n(C)c2c1
InChI 
InChI=1S/C25H27ClN2O5S/c1-15-12-20(26)19-14-22(28(3)21(19)13-15)23(29)27-16(2)17-6-8-18(9-7-17)34(32,33)25(24(30)31)10-4-5-11-25/h6-9,12-14,16H,4-5,10-11H2,1-3H3,(H,27,29)(H,30,31)/t16-/m1/s1
InChIKey 
RSFJHBNNHUWWQS-MRXNPFEDSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Activity
1160760
Curation
pdb_similarity_tanimoto
Binding sites
PF02826

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to KP13_02169.

PDB 20

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 99

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)