Ligand profile

CHEMBL2332102

Bioactivity hit from ChEMBL on a similar protein.

Bound to: KP13_03016 — putative ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter

Via homolog UniProt P04191 Formula C₃₈H₅₆O₁₃
pchembl 7.89 ~12.9 nM
Mol. weight 720.85 Da
Permeability Check
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
CHEMBL2332102
UniProt (similar protein)
P04191
pchembl
7.890 (~12.9 nM)
Target protein
KP13_03016

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 720.85 Da
LogP (Crippen) 5.13
H-bond donors 1
H-bond acceptors 13
TPSA 178.03 Ų
Rotatable bonds 15
Aromatic rings 0 / 3
Heavy atoms 51
Fraction sp³ C 0.74
Formula C₃₈H₅₆O₁₃

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy Check

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 178.0
  • −1 ≤ LogP ≤ 5 5.13
Lipinski's Rule of Five Fail 3 violations
  • MW ≤ 500 Da 720.9
  • LogP ≤ 5 5.13
  • H-bond donors ≤ 5 1
  • H-bond acceptors ≤ 10 13
Veber's rules Fail
  • Rotatable bonds ≤ 10 15
  • TPSA ≤ 140 Ų 178.0
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
C/C=C(/C)C(=O)O[C@H]1C(C)=C2[C@H]([C@@H]1OC(=O)CCCCCCC)[C@@](C)(OC(C)=O)C[C@H](OC(=O)CCC)[C@@]1(OC(=O)C(C)C)[C@H]2OC(=O)[C@@]1(C)O
InChI 
InChI=1S/C38H56O13/c1-11-14-15-16-17-19-27(41)47-31-29-28(23(7)30(31)48-34(43)22(6)13-3)32-38(51-33(42)21(4)5,37(10,45)35(44)49-32)25(46-26(40)18-12-2)20-36(29,9)50-24(8)39/h13,21,25,29-32,45H,11-12,14-20H2,1-10H3/b22-13-/t25-,29+,30-,31-,32-,36-,37+,38+/m0/s1
InChIKey 
OKFYKIYLGJLUFS-BHKCYLJASA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Source
ChEMBL
Curation
pdb_similarity_tanimoto
Binding sites
PF00122' 'PF00689' 'PF00690

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to KP13_03016.

PDB 27

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ChEMBL 29

Compounds with measured inhibitory activity on this target (higher pchembl = more potent).

Compound Potency (pchembl)

ZINC 50

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)