Ligand profile

ZINC112977758

Virtual-screening candidate from ZINC.

Bound to: KP13_05137 — Cyclopropane-fatty-acyl-phospholipid synthase

Via homolog UniProt Q79FX6 Formula C₁₅H₃₆N₂²⁺
Tanimoto 0.79
Mol. weight 244.47 Da
Permeability High
PAINS Clean

Identifiers

Database identifiers and provenance.

Ligand ID
ZINC112977758
UniProt (similar protein)
Q79FX6
Tanimoto
0.789
Target protein
KP13_05137

Structure

2D representation rendered from SMILES.

Physicochemical properties

Computed with RDKit from SMILES.

Molecular weight 244.47 Da
LogP (Crippen) 3.13
H-bond donors 0
H-bond acceptors 0
TPSA 0.00 Ų
Rotatable bonds 10
Aromatic rings 0 / 0
Heavy atoms 17
Fraction sp³ C 1.00
Formula C₁₅H₃₆N₂²⁺

Drug-likeness

Descriptor-based ADME screening flags from SMILES. These are not experimental toxicity results.

Permeability proxy High

Estimated from TPSA and LogP only: TPSA ≤ 90 Ų and −1 ≤ LogP ≤ 5 are treated as a favorable small-molecule permeability screen.

  • TPSA ≤ 90 Ų 0.0
  • −1 ≤ LogP ≤ 5 3.13
Lipinski's Rule of Five Pass 0 violations
  • MW ≤ 500 Da 244.5
  • LogP ≤ 5 3.13
  • H-bond donors ≤ 5 0
  • H-bond acceptors ≤ 10 0
Veber's rules Pass
  • Rotatable bonds ≤ 10 10
  • TPSA ≤ 140 Ų 0.0
PAINS Clean

No PAINS structural alerts detected.

Chemical representations

Canonical representations for cheminformatics workflows.

SMILES 
CCCCCCC[N+](C)(C)CCC[N+](C)(C)C
InChI 
InChI=1S/C15H36N2/c1-7-8-9-10-11-14-17(5,6)15-12-13-16(2,3)4/h7-15H2,1-6H3/q+2
InChIKey 
HRZQNDWDAPBHSB-UHFFFAOYSA-N

Provenance

Annotation context from LigQ_2, the internal Target step that collects PDB, ChEMBL, and ZINC ligand evidence.

Method
LigQ nearest_k
Query
16A
Homolog
Q79FX6

External resources

Open this ligand in third-party databases and cheminformatics tools.

Other ligands for this protein

Quick navigation to other ligands bound to KP13_05137.

PDB 7

Ligands co-crystallized with this protein (structural evidence).

Ligand PDB entry

ZINC 49

Virtual screening candidates selected by structural similarity to known actives (Tanimoto ≥ 0.5).

Compound Similarity (Tanimoto)