Protein profile

HT085_RS00060

helix-turn-helix domain-containing protein

Genome: NZ_AP023069.1

Gene: TUM19854C_00100 Structure source: ColabFold
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Amino acids 103
Annotations 1
Features 13
PDB binders 0

Overview

Basic information about this protein and its source genome.

Accession
HT085_RS00060
Assembly
Neisseria gonorrhoeae strain TUM19854 chromosome, complete genome
Gene
TUM19854C_00100
Status
annotated
Amino acids
103
Structure source
ColabFold
GO
GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Unknown

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Sequence Features

Domain/signature hits from InterPro and related databases.

13 records
Show feature table
Start End DB Term Name
48 83 ProSiteProfiles PS50943 Cro/C1-type HTH domain profile.
48 83 InterPro IPR001387 Cro/C1-type helix-turn-helix domain
45 91 CDD cd00093 HTH_XRE
45 91 InterPro IPR001387 Cro/C1-type helix-turn-helix domain
48 87 Pfam PF01381 Helix-turn-helix
48 87 InterPro IPR001387 Cro/C1-type helix-turn-helix domain
38 99 Gene3D G3DSA:1.10.260.40 -
38 99 InterPro IPR010982 Lambda repressor-like, DNA-binding domain superfamily
45 100 SUPERFAMILY SSF47413 lambda repressor-like DNA-binding domains
45 100 InterPro IPR010982 Lambda repressor-like, DNA-binding domain superfamily
47 102 SMART SM00530 mbf_short4
47 102 InterPro IPR001387 Cro/C1-type helix-turn-helix domain
2 102 PANTHER PTHR36511 MERR FAMILY BACTERIAL REGULATORY PROTEIN

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

No pockets are loaded yet for the displayed ColabFold model HT085_RS00060 structure. Run experimental pocket backfill to show FPocket/P2Rank overlays on this structure.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold HT085_RS00060
ColabFold — — full sequence — Viewing