Protein profile

HT085_RS00245

carbamoyl-phosphate synthase large subunit

Genome: NZ_AP023069.1

Gene: carB TUM19854C_00390 Structure source: ColabFold
Amino acids 1071
Annotations 2
Features 73
PDB binders 20

Overview

Basic information about this protein and its source genome.

Accession
HT085_RS00245
Gene
carB TUM19854C_00390
Status
annotated
Amino acids
1071
Structure source
ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Unknown

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket Low
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0046872 Binding to a metal ion.

Sequence Features

Domain/signature hits from InterPro and related databases.

73 records
Show feature table
Start End DB Term Name
931 1071 ProSiteProfiles PS51855 MGS-like domain profile.
931 1071 InterPro IPR011607 Methylglyoxal synthase-like domain
552 670 SUPERFAMILY SSF52440 PreATP-grasp domain
552 670 InterPro IPR016185 Pre-ATP-grasp domain superfamily
1069 1071 Coils Coil Coil
419 542 SMART SM01096 CPSase_L_D3_2
419 542 InterPro IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain
668 870 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain
668 870 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
128 334 Pfam PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain
128 334 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
168 180 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature
168 180 InterPro IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain
239 256 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature
239 256 InterPro IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain
380 398 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature
380 398 InterPro IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain
19 33 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature
19 33 InterPro IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain
204 223 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature
204 223 InterPro IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain
48 58 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature
48 58 InterPro IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain
297 326 PRINTS PR00098 Carbamoyl-phosphate synthase protein CPSase domain signature
297 326 InterPro IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain
422 500 Pfam PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain
422 500 InterPro IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain
396 549 SUPERFAMILY SSF48108 Carbamoyl phosphate synthetase, large subunit connection domain
396 549 InterPro IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily
931 1066 SUPERFAMILY SSF52335 Methylglyoxal synthase-like
931 1066 InterPro IPR036914 Methylglyoxal synthase-like domain superfamily
119 403 FunFam G3DSA:3.30.470.20:FF:000007 Carbamoyl-phosphate synthase large chain
6 1051 PANTHER PTHR11405 CARBAMOYLTRANSFERASE FAMILY MEMBER
1 116 Gene3D G3DSA:3.40.50.20 -
660 930 FunFam G3DSA:3.30.470.20:FF:000013 Carbamoyl-phosphate synthase large chain
2 1046 NCBIfam TIGR01369 carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
2 1046 InterPro IPR006275 Carbamoyl-phosphate synthase, large subunit
403 548 Gene3D G3DSA:1.10.1030.10 -
403 548 InterPro IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily
297 304 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
297 304 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
1 116 FunFam G3DSA:3.40.50.20:FF:000001 Carbamoyl-phosphate synthase large chain
668 928 SUPERFAMILY SSF56059 Glutathione synthetase ATP-binding domain-like
704 718 ProSitePatterns PS00866 Carbamoyl-phosphate synthase subdomain signature 1.
704 718 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
133 328 ProSiteProfiles PS50975 ATP-grasp fold profile.
133 328 InterPro IPR011761 ATP-grasp fold
681 750 FunFam G3DSA:3.30.1490.20:FF:000001 Carbamoyl-phosphate synthase large chain
950 1037 SMART SM00851 MGS_2a
950 1037 InterPro IPR011607 Methylglyoxal synthase-like domain
128 401 SUPERFAMILY SSF56059 Glutathione synthetase ATP-binding domain-like
1 127 SUPERFAMILY SSF52440 PreATP-grasp domain
1 127 InterPro IPR016185 Pre-ATP-grasp domain superfamily
833 840 ProSitePatterns PS00867 Carbamoyl-phosphate synthase subdomain signature 2.
833 840 InterPro IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain
405 548 FunFam G3DSA:1.10.1030.10:FF:000002 Carbamoyl-phosphate synthase large chain
549 657 FunFam G3DSA:3.40.50.20:FF:000003 Carbamoyl-phosphate synthase large chain
119 402 Gene3D G3DSA:3.30.470.20 -
937 1047 CDD cd01424 MGS_CPS_II
937 1047 InterPro IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain
549 657 Gene3D G3DSA:3.40.50.20 -
951 1037 Pfam PF02142 MGS-like domain
951 1037 InterPro IPR011607 Methylglyoxal synthase-like domain
1 1058 Hamap MF_01210_B Carbamoyl-phosphate synthase large chain [carB].
1 1058 InterPro IPR006275 Carbamoyl-phosphate synthase, large subunit
5 1063 Hamap MF_01210_A Carbamoyl-phosphate synthase large chain [carB].
5 1063 InterPro IPR006275 Carbamoyl-phosphate synthase, large subunit
932 1068 Gene3D G3DSA:3.40.50.1380 -
932 1068 InterPro IPR036914 Methylglyoxal synthase-like domain superfamily
660 930 Gene3D G3DSA:3.30.470.20 -
1 24 ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile.
673 864 ProSiteProfiles PS50975 ATP-grasp fold profile.
673 864 InterPro IPR011761 ATP-grasp fold

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold HT085_RS00245
ColabFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
4 0.306

Ligand evidence

Ligands grouped by evidence source — prioritize those reported for this exact protein.

93 records

Structural evidence inferred from similar proteins. The UniProt column identifies the protein that carried the ligand in PDB.

Show only:
Ligand PDB structure UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
0L1 4utz P31327 146.1 Da LogP 0.72 TPSA 74.6 ✓ Ro5 ✓ Clean C(CCC(=O)O)CC(=O)O
3NP 4utx P31327 119.1 Da LogP -0.26 TPSA 80.4 ✓ Ro5 ✓ Clean C(C[N+](=O)[O-])C(=O)O
ACP 4mv8 P43873 505.2 Da LogP -1.52 TPSA 269.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ANP 1bxr P00968 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
F9V 4utv P31327 194.2 Da LogP 1.33 TPSA 74.6 ✓ Ro5 ✓ Clean c1ccc(cc1)C(CC(=O)O)C(=O)O
GUA 4utr P31327 132.1 Da LogP 0.33 TPSA 74.6 ✓ Ro5 ✓ Clean C(CC(=O)O)CC(=O)O
IMP 1ce8 P00968 348.2 Da LogP -2.15 TPSA 180.0 ✓ Ro5 ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O…
JO3 4uu7 P31327 132.1 Da LogP 0.18 TPSA 74.6 ✓ Ro5 ✓ Clean CC(CC(=O)O)C(=O)O
MQV 6oi8 P43873 429.9 Da LogP 3.38 TPSA 106.8 ✓ Ro5 ✓ Clean c1cc(c(c(c1)Cl)c2cc3cnc(nc3nc2N4C[C@@H]5[C@H](C…
MV4 6ojh P43873 356.4 Da LogP 2.96 TPSA 94.0 ✓ Ro5 ✓ Clean c1ccc2c(c1)cccc2c3cc4cnc(nc4nc3N5CC[C@H](C5)N)N
NLG 5dou P31327 189.2 Da LogP -0.56 TPSA 103.7 ✓ Ro5 ✓ Clean CC(=O)N[C@@H](CCC(=O)O)C(=O)O
NX6 4uua P31327 267.2 Da LogP 0.84 TPSA 112.9 ✓ Ro5 ✓ Clean c1ccc(cc1)COC(=O)N[C@@H](CC(=O)O)C(=O)O
ORN 1ce8 P00968 132.2 Da LogP -0.86 TPSA 89.3 ✓ Ro5 ✓ Clean C(C[C@@H](C(=O)O)N)CN
PCT 4mv6 P43873 139.0 Da LogP -1.35 TPSA 100.6 ✓ Ro5 ✓ Clean C(C(=O)N)P(=O)(O)O
PPF 4mv7 P43873 126.0 Da LogP -0.16 TPSA 94.8 ✓ Ro5 ✓ Clean C(=O)(O)P(=O)(O)O
Q5A 6uel P31327 390.5 Da LogP 3.49 TPSA 65.5 ✓ Ro5 ✓ Clean Cc1csc(n1)NC(=O)C2CCN(CC2)C(=O)N(C)Cc3ccc(cc3)F
SU8 4uub P31327 174.2 Da LogP 1.35 TPSA 74.6 ✓ Ro5 ✓ Clean CCCC[C@H](CC(=O)O)C(=O)O
SUH 4uu7 P31327 132.1 Da LogP 0.18 TPSA 74.6 ✓ Ro5 ✓ Clean C[C@@H](CC(=O)O)C(=O)O
WOC 4uu8 P31327 146.1 Da LogP 0.57 TPSA 74.6 ✓ Ro5 ✓ Clean CC(C)(CC(=O)O)C(=O)O
Y7Y 4rzq P43873 316.4 Da LogP 1.36 TPSA 84.9 ✓ Ro5 ✓ Clean COC(=O)CCCC[C@H]1[C@@H]2[C@H](CS1)N(C(=O)N2)C(=…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.