Protein profile

PA0119

C4-dicarboxylate transporter DctA

Genome: NC_002516.2

Gene: PA0119 dctA1 Structure source: AlphaFold UniProt Q9I713
Amino acids 449
Annotations 8
Features 49
PDB binders 8
Druggability 0.927

Overview

Basic information about this protein and its source genome.

Accession
PA0119
Gene
PA0119 dctA1
Status
annotated
Amino acids
449
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
33.858
Human E-value
8.45e-13
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.927
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

8 GO

Gene Ontology (GO)

8
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0015138 Enables the transfer of fumarate from one side of a membrane to the other. Fumarate is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate.
  • GO:0015366 Enables the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: malate(out) + H+(out) = malate(in) + H+(in).
  • GO:0015141 Enables the transfer of succinate, the dianion of ethane dicarboxylic acid, from one side of a membrane to the other.
  • GO:0070778 The directed movement of L-aspartate across a membrane by means of some agent such as a transporter or a pore.
  • GO:0015293 Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported together in the same direction in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy.
  • GO:0006835 The directed movement of dicarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.

Sequence Features

Domain/signature hits from InterPro and related databases.

49 records
Show feature table
Start End DB Term Name
84 106 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 14 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
346 356 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
302 325 ProSitePatterns PS00714 Sodium:dicarboxylate symporter family signature 2.
302 325 InterPro IPR018107 Sodium:dicarboxylate symporter, conserved site
221 225 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
157 174 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
195 220 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
267 284 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
311 333 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
6 414 Gene3D G3DSA:1.10.3860.10 Sodium:dicarboxylate symporter
6 414 InterPro IPR036458 Sodium:dicarboxylate symporter superfamily
384 406 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
74 84 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
15 33 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
34 52 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
53 73 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
226 246 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
285 311 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
85 105 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
53 71 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
407 449 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
12 418 PANTHER PTHR42865 PROTON/GLUTAMATE-ASPARTATE SYMPORTER
12 418 InterPro IPR001991 Sodium:dicarboxylate symporter
312 345 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
80 105 PRINTS PR00173 Glutamate-aspartate symporter signature
152 174 PRINTS PR00173 Glutamate-aspartate symporter signature
9 29 PRINTS PR00173 Glutamate-aspartate symporter signature
334 353 PRINTS PR00173 Glutamate-aspartate symporter signature
299 325 PRINTS PR00173 Glutamate-aspartate symporter signature
199 218 PRINTS PR00173 Glutamate-aspartate symporter signature
50 70 PRINTS PR00173 Glutamate-aspartate symporter signature
8 435 Hamap MF_01300 C4-dicarboxylate transport protein [dctA].
8 435 InterPro IPR023954 C4-dicarboxylate transport protein
175 194 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
197 219 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
16 408 Pfam PF00375 Sodium:dicarboxylate symporter family
16 408 InterPro IPR001991 Sodium:dicarboxylate symporter
379 383 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
229 251 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
7 414 FunFam G3DSA:1.10.3860.10:FF:000001 C4-dicarboxylate transport protein
157 176 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
247 266 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
106 156 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
357 378 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
16 409 SUPERFAMILY SSF118215 Proton glutamate symport protein
16 409 InterPro IPR036458 Sodium:dicarboxylate symporter superfamily
16 38 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
358 380 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA0119
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.438

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

136 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
6OU O59010 718.0 Da LogP 11.05 TPSA 134.4 2 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OCCN)OC(=…
BCS O59010 211.3 Da LogP 1.33 TPSA 63.3 ✓ Ro5 ✓ Clean c1ccc(cc1)CSC[C@@H](C(=O)O)N
DAS Q5JID0 133.1 Da LogP -1.13 TPSA 100.6 ✓ Ro5 ✓ Clean C([C@H](C(=O)O)N)C(=O)O
DMU Q5JID0 482.6 Da LogP -1.23 TPSA 178.5 2 viol. ✓ Clean CCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)C…
PLM O59010 256.4 Da LogP 5.55 TPSA 37.3 1 viol. ✓ Clean CCCCCCCCCCCCCCCC(=O)O
QJW Q5JID0 284.2 Da LogP -0.02 TPSA 153.0 ✓ Ro5 ✓ Clean c1ccc(c(c1)CO[C@@H]([C@@H](C(=O)O)N)C(=O)O)N(=O…
QM5 Q5JID0 375.4 Da LogP 1.52 TPSA 143.1 ✓ Ro5 ✓ Clean COc1ccc(cc1)NNc2ccc(cc2)CO[C@@H]([C@@H](C(=O)O)…
TL O59010 204.4 Da LogP -0.38 TPSA 0.0 ✓ Ro5 ✓ Clean [Tl+]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.