Protein profile

PA0144

hypothetical protein

Genome: NC_002516.2

Gene: PA0144 Structure source: AlphaFold UniProt Q9I6Y8

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Amino acids 208

Annotations 2

Features 13

PDB binders 4

Druggability 0.915

Overview

Basic information about this protein and its source genome.

Accession: PA0144
Assembly: Pseudomonas aeruginosa PAO1, complete genome
Gene: PA0144
Status: annotated
Amino acids: 208
Structure source: AlphaFold

GO:0070694 Catalysis of the reaction: 5-hydroxymethyl-dUMP + H2O = 2-deoxy-D-ribose 5-phosphate + 5-hydroxymethyluracil. GO:0009159 The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar.

Target profile

Computed evidence for target prioritization.

Human off-target: No hit
Gut microbiome off-target: hit
Essential (DEG): N
Localization: Unknown

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.915

Structure –

Pocket –

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

GO:0070694 Catalysis of the reaction: 5-hydroxymethyl-dUMP + H2O = 2-deoxy-D-ribose 5-phosphate + 5-hydroxymethyluracil.
GO:0009159 The chemical reactions and pathways resulting in the breakdown of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar.

Sequence Features

Domain/signature hits from InterPro and related databases.

13 records

Show feature table

Start	End	DB	Term	Name
13	35	TMHMM	TMhelix	Region of a membrane-bound protein predicted to be embedded in the membrane.
36	207	Gene3D	G3DSA:3.40.50.450	-
1	35	Phobius	SIGNAL_PEPTIDE	Signal peptide region
1	15	Phobius	SIGNAL_PEPTIDE_N_REGION	N-terminal region of a signal peptide.
1	37	ProSiteProfiles	PS51318	Twin arginine translocation (Tat) signal profile.
1	37	InterPro	IPR006311	Twin-arginine translocation pathway, signal sequence
28	35	Phobius	SIGNAL_PEPTIDE_C_REGION	C-terminal region of a signal peptide.
37	198	PANTHER	PTHR15364	2'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1
16	27	Phobius	SIGNAL_PEPTIDE_H_REGION	Hydrophobic region of a signal peptide.
42	183	Pfam	PF05014	Nucleoside 2-deoxyribosyltransferase
42	183	InterPro	IPR007710	Nucleoside 2-deoxyribosyltransferase
36	208	Phobius	NON_CYTOPLASMIC_DOMAIN	Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
40	199	SUPERFAMILY	SSF52309	N-(deoxy)ribosyltransferase-like

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry	Method	Resolution	Chain	Coverage	Links	Status
AlphaFold PA0144	AlphaFold	—	—	full sequence	—	Viewing

Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET	Sticks	Spheres	Surfaces	Druggability	Labels	Zoom	Positions
2				0.915
3				0.239

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

54 records

Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.

No PDB structure with a co-crystallized ligand found for this exact protein.

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Ligand	Source crystal	UniProt (homolog)	MW · LogP · TPSA	Lipinski	PAINS	SMILES
12B	2F67	Q57VC7	169.2 Da LogP 2.41 TPSA 29.1	✓ Ro5	✓ Clean	`c1cc2cccc3c2c(c1)C(=O)N3`
12M	2F62	Q57VC7	136.2 Da LogP 1.74 TPSA 20.2	✓ Ro5	✓ Clean	`CCc1ccccc1CO`
12Q	2F64	Q57VC7	159.2 Da LogP 1.54 TPSA 22.0	✓ Ro5	✓ Clean	`CN1c2ccccc2C=CC1=O`
5IQ	2F2T	Q57VC7	144.2 Da LogP 1.82 TPSA 38.9	✓ Ro5	✓ Clean	`c1cc2cnccc2c(c1)N`

Experimental bioactivity from ChEMBL measured directly on this protein. Score = pchembl (−log Ki/IC₅₀; higher = more potent).

No ChEMBL bioactivity data found for this exact protein.

Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).

No ChEMBL hits found through similar proteins.

Proposed virtual-screening candidates from ZINC. Score = Tanimoto similarity to a known binder (0–1; higher = more similar).

Ligand	Tanimoto	MW · LogP · TPSA	Lipinski	PAINS	SMILES
ZINC196113288	0.625	248.1 Da LogP 3.17 TPSA 29.1	✓ Ro5	✓ Clean	`O=C1Nc2cccc3cc(Br)cc1c23`
ZINC158610	0.586	208.1 Da LogP 3.00 TPSA 12.9	✓ Ro5	✓ Clean	`Brc1cccc2cnccc12`
ZINC26507140	0.586	255.1 Da LogP 2.84 TPSA 12.9	✓ Ro5	✓ Clean	`Ic1cccc2cnccc12`
ZINC16974563	0.577	238.2 Da LogP 2.50 TPSA 58.2	✓ Ro5	✓ Clean	`O=C1Nc2ccccc2C(=O)Nc2ccccc21`
ZINC401273	0.577	238.2 Da LogP 2.50 TPSA 58.2	✓ Ro5	✓ Clean	`O=C1Nc2ccccc2NC(=O)c2ccccc21`
ZINC458960	0.567	209.2 Da LogP 2.69 TPSA 22.0	✓ Ro5	✓ Clean	`Cn1c(=O)ccc2ccc3ccccc3c21`
ZINC95635332	0.567	238.1 Da LogP 2.30 TPSA 22.0	✓ Ro5	✓ Clean	`Cn1c(=O)ccc2ccc(Br)cc21`
ZINC216746185	0.559	222.3 Da LogP 2.27 TPSA 64.7	✓ Ro5	✓ Clean	`Nc1ncc(-c2cccc3cnccc23)cn1`
ZINC13488994	0.548	223.1 Da LogP 2.58 TPSA 38.9	✓ Ro5	✓ Clean	`Nc1ccc2cnccc2c1Br`
ZINC170009747	0.548	292.0 Da LogP 2.78 TPSA 12.9	✓ Ro5	✓ Clean	`C[Sn](C)(C)c1cccc2cnccc12`
ZINC95775467	0.548	238.1 Da LogP 2.30 TPSA 22.0	✓ Ro5	✓ Clean	`Cn1c(=O)ccc2cc(Br)ccc21`
ZINC208615	0.545	248.1 Da LogP 3.17 TPSA 29.1	✓ Ro5	✓ Clean	`O=C1Nc2ccc(Br)c3cccc1c23`
ZINC247771	0.545	295.1 Da LogP 3.01 TPSA 29.1	✓ Ro5	✓ Clean	`O=C1Nc2ccc(I)c3cccc1c23`
ZINC28643174	0.545	208.2 Da LogP 0.88 TPSA 73.1	✓ Ro5	✓ Clean	`NS(=O)(=O)c1cccc2cnccc12`
ZINC39189108	0.545	248.1 Da LogP 3.17 TPSA 29.1	✓ Ro5	✓ Clean	`O=C1Nc2cccc3c(Br)ccc1c23`
ZINC405521	0.545	203.6 Da LogP 3.06 TPSA 29.1	✓ Ro5	✓ Clean	`O=C1Nc2ccc(Cl)c3cccc1c23`
ZINC56708	0.545	214.3 Da LogP 2.34 TPSA 40.5	✓ Ro5	✓ Clean	`OCc1ccccc1-c1ccccc1CO`
ZINC71772189	0.545	295.1 Da LogP 3.01 TPSA 29.1	✓ Ro5	✓ Clean	`O=C1Nc2cccc3c(I)ccc1c23`
ZINC88446155	0.543	222.3 Da LogP 2.27 TPSA 64.7	✓ Ro5	✓ Clean	`Nc1cnc(-c2cccc3cnccc23)cn1`
ZINC88677411	0.543	222.3 Da LogP 2.27 TPSA 64.7	✓ Ro5	✓ Clean	`Nc1cncc(-c2cccc3cnccc23)n1`
ZINC143515753	0.538	200.3 Da LogP 1.64 TPSA 54.4	✓ Ro5	✓ Clean	`CCc1ccccc1CS(=O)(=O)O`
ZINC216150732	0.538	251.3 Da LogP 2.89 TPSA 61.0	✓ Ro5	✓ Clean	`COc1c(N)ccnc1-c1cccc2cnccc12`
ZINC85650727	0.538	225.1 Da LogP 3.70 TPSA 0.0	✓ Ro5	✓ Clean	`C=C(Br)Cc1ccccc1CC`
ZINC301393	0.536	212.2 Da LogP 2.21 TPSA 37.3	✓ Ro5	✓ Clean	`CCP(=O)(CC)c1ccccc1CO`
ZINC3126818	0.536	210.2 Da LogP 3.00 TPSA 41.1	✓ Ro5	✓ Clean	`O=C1Nc2ccccc2Nc2ccccc21`
ZINC45069786	0.536	271.3 Da LogP 4.59 TPSA 29.1	✓ Ro5	✓ Clean	`O=C1Nc2ccccc2-c2ccccc2-c2ccccc21`
ZINC1707112	0.533	229.3 Da LogP 4.54 TPSA 12.9	✓ Ro5	✓ Clean	`c1ccc2c(c1)ccc1c3ccncc3ccc21`
ZINC36415879	0.531	321.3 Da LogP 4.62 TPSA 46.2	✓ Ro5	✓ Clean	`O=c1[nH]c(=O)c2ccc3c4cccc5cccc(c6ccc1c2c63)c54`
ZINC61123268	0.528	221.3 Da LogP 2.88 TPSA 51.8	✓ Ro5	✓ Clean	`Nc1ccc(-c2cccc3cnccc23)cn1`
ZINC72207100	0.528	222.3 Da LogP 2.27 TPSA 64.7	✓ Ro5	✓ Clean	`Nc1nccc(-c2cccc3cnccc23)n1`
ZINC72207102	0.528	227.3 Da LogP 2.94 TPSA 51.8	✓ Ro5	✓ Clean	`Nc1nc(-c2cccc3cnccc23)cs1`
ZINC215338108	0.519	215.1 Da LogP 2.50 TPSA 20.2	✓ Ro5	✓ Clean	`CCc1ccc(Br)cc1CO`
ZINC238331811	0.519	262.1 Da LogP 2.35 TPSA 20.2	✓ Ro5	✓ Clean	`CCc1cc(I)ccc1CO`
ZINC306756986	0.519	262.1 Da LogP 2.35 TPSA 20.2	✓ Ro5	✓ Clean	`CCc1ccc(I)cc1CO`
ZINC90413497	0.519	215.1 Da LogP 2.50 TPSA 20.2	✓ Ro5	✓ Clean	`CCc1cc(Br)ccc1CO`
ZINC98022965	0.516	239.2 Da LogP 1.72 TPSA 72.5	✓ Ro5	✓ Clean	`O=c1[nH]c2ccc3c(=O)oc(=O)c4ccc1c2c34`
ZINC1724711	0.515	235.3 Da LogP 3.21 TPSA 22.0	✓ Ro5	✓ Clean	`Cn1c(=O)c(-c2ccccc2)cc2ccccc21`
ZINC575441935	0.515	203.2 Da LogP 1.24 TPSA 59.3	✓ Ro5	✓ Clean	`Cn1c(=O)ccc2ccc(C(=O)O)cc21`
ZINC58377977	0.515	312.4 Da LogP 3.63 TPSA 61.4	✓ Ro5	✓ Clean	`CCc1cccc(CC)c1NC(=O)NCc1ccccc1CO`
ZINC220559972	0.514	237.3 Da LogP 1.86 TPSA 90.7	✓ Ro5	✓ Clean	`Nc1cc(-c2cccc3cnccc23)nc(N)n1`
ZINC88084762	0.514	238.3 Da LogP 3.62 TPSA 38.9	✓ Ro5	✓ Clean	`Nc1ccc(-c2cccc3cnccc23)c(F)c1`
ZINC1681255	0.500	209.2 Da LogP 1.48 TPSA 67.3	✓ Ro5	✓ Clean	`O=S(=O)(O)c1cccc2cnccc12`
ZINC20599404	0.500	236.3 Da LogP 2.58 TPSA 64.7	✓ Ro5	✓ Clean	`Cc1cnc(-c2cccc3cnccc23)nc1N`
ZINC2069662558	0.500	205.2 Da LogP 2.48 TPSA 30.0	✓ Ro5	✓ Clean	`CP(C)(=O)c1cccc2cnccc12`
ZINC24218	0.500	213.2 Da LogP 1.43 TPSA 66.4	✓ Ro5	✓ Clean	`O=C1NC(=O)c2cc(O)cc3cccc1c23`
ZINC308777712	0.500	204.2 Da LogP 1.45 TPSA 65.1	✓ Ro5	✓ Clean	`Cn1c(=O)ccc2ccc([N+](=O)[O-])cc21`
ZINC34313	0.500	276.1 Da LogP 2.49 TPSA 46.2	✓ Ro5	✓ Clean	`O=C1NC(=O)c2cc(Br)cc3cccc1c23`
ZINC39121480	0.500	203.2 Da LogP 1.24 TPSA 59.3	✓ Ro5	✓ Clean	`Cn1c(=O)ccc2cc(C(=O)O)ccc21`
ZINC8773035	0.500	203.3 Da LogP 1.89 TPSA 50.9	✓ Ro5	✓ Clean	`NC(=S)Nc1cccc2cnccc12`
ZINC97758451	0.500	238.1 Da LogP 2.30 TPSA 22.0	✓ Ro5	✓ Clean	`Cn1c(=O)ccc2c(Br)cccc21`

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.