Protein profile

PA0158

resistance-nodulation-cell division (RND) efflux transporter

Genome: NC_002516.2

Gene: PA0158 Structure source: AlphaFold UniProt Q9I6X4
Amino acids 1015
Annotations 5
Features 69
PDB binders 34
Druggability 0.83

Overview

Basic information about this protein and its source genome.

Accession
PA0158
Gene
PA0158
Status
annotated
Amino acids
1015
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.83
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

5 GO

Gene Ontology (GO)

5
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0042910 Enables the directed movement of a xenobiotic from one side of a membrane to the other. A xenobiotic is a compound foreign to the organism exposed to it. It may be synthesized by another organism (like ampicilin) or it can be a synthetic chemical.
  • GO:0022857 Enables the transfer of a substance, usually a specific substance or a group of related substances, from one side of a membrane to the other.
  • GO:0055085 The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.

Sequence Features

Domain/signature hits from InterPro and related databases.

69 records
Show feature table
Start End DB Term Name
789 1010 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
295 492 SUPERFAMILY SSF82866 Multidrug efflux transporter AcrB transmembrane domain
707 795 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
707 795 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
557 655 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
189 267 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
189 267 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
37 336 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
17 36 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
958 977 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
44 139 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
553 653 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
1008 1015 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
907 931 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
882 901 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
362 379 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
707 790 SUPERFAMILY SSF82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
707 790 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
494 523 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
524 544 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
392 414 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
468 490 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
388 412 PRINTS PR00702 Acriflavin resistance protein family signature
388 412 InterPro IPR001036 Acriflavin resistance protein
441 464 PRINTS PR00702 Acriflavin resistance protein family signature
441 464 InterPro IPR001036 Acriflavin resistance protein
334 357 PRINTS PR00702 Acriflavin resistance protein family signature
334 357 InterPro IPR001036 Acriflavin resistance protein
42 60 PRINTS PR00702 Acriflavin resistance protein family signature
42 60 InterPro IPR001036 Acriflavin resistance protein
539 556 PRINTS PR00702 Acriflavin resistance protein family signature
539 556 InterPro IPR001036 Acriflavin resistance protein
466 489 PRINTS PR00702 Acriflavin resistance protein family signature
466 489 InterPro IPR001036 Acriflavin resistance protein
415 433 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
356 360 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
906 928 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
983 1005 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
983 1007 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
455 465 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
361 380 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
545 881 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
15 37 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
466 493 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
184 276 Gene3D G3DSA:3.30.2090.10 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
184 276 InterPro IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains
8 1005 Pfam PF00873 AcrB/AcrD/AcrF family
8 1005 InterPro IPR001036 Acriflavin resistance protein
381 391 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
15 502 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
392 414 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
1 16 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
902 906 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
140 329 Gene3D G3DSA:3.30.70.1320 Multidrug efflux transporter AcrB pore domain like
434 456 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
956 978 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
6 1010 PANTHER PTHR32063 -
6 1010 InterPro IPR001036 Acriflavin resistance protein
336 358 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
434 454 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
932 957 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
524 541 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
656 857 Gene3D G3DSA:3.30.70.1440 Multidrug efflux transporter AcrB pore domain
882 901 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
141 327 SUPERFAMILY SSF82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
978 982 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
44 803 Gene3D G3DSA:3.30.70.1430 Multidrug efflux transporter AcrB pore domain
503 1005 Gene3D G3DSA:1.20.1640.10 Multidrug efflux transporter AcrB transmembrane domain
337 355 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

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Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA0158
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
13 0.83
8 0.332
25 0.301

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

137 records

Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.

Show only:
Ligand Source crystal MW · LogP · TPSA Lipinski PAINS SMILES
LMU 510.6 Da LogP -0.45 TPSA 178.5 3 viol. ✓ Clean CCCCCCCCCCCCO[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.