Protein profile

PA0575

hypothetical protein

Genome: NC_002516.2

Gene: PA0575 Structure source: Experimental + AlphaFold UniProt Q9I5W1
Amino acids 1245
Annotations 9
Features 112
PDB binders 4
Druggability 0.684

Overview

Basic information about this protein and its source genome.

Accession
PA0575
Gene
PA0575
Status
annotated
Amino acids
1245
Structure source
Experimental + AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
31.034
Human E-value
4.67e-06
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.684
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

MQRLQAVLLLCLACCWPGLAGALTLTPEERAWLAEHPSIRLGMDTSWPPFEYRDEQGRYQGLAAGYIGLLQERLSVSLTPVEPKTWTQVLEQAKDGRLDLLPGIMATPERQEYLSFTRPYLDFPIIILARKNGPMPKRIDELYGLKVAVVDHYAPHELLIAQHPDLTLLPLPSVAAALQALATGQADAFVGDFASSVWNLRQLKLNGLEISGETPYRYQLAMAVPRGQPILAGIVDKVLADLSAGEIERLQAPWVGGLLDRRPAWREMATYGLPIVLLILVSVAILLAMNRRLRREVSRRRQLERELRDSEQHYRGLVESLNAIAWEMRLEENRFTYVSPHAERLLGYPLGEWLQPGFWQRTLHPMDAEYAIHYCMSESQAGRDHSFDYRMLAADGRVVWIRDLVTPITQGRDLLLRGLMIDITEAKLTEQAMRLSEQKFASVFHHCPDMVVLANGADGRFLAVNSTFEQQIGIAADDAIGKTATELGIWALPGLGPQVLEKLGHGNLTNLEVPLRRRNGSTFSALLSAQHVALDQTPALVVVIRDITHLVETQELLRISEEKFANAFHAYPDGLLISSLEDGTLIDVNEGFTRLTGYRRDEVISRSTLELGLWVDTEDRKRLISLVRHHTLTQGFTAPVRDRNGGIRQCEMSAHRISIDGEDCVLTIARDITERQLMQEKLQQAATVFESTAEGVMITDTRQRITAVNRAFSEITGYSEQEALGRSPSLLSSGQHDSSFYLAMWNQLERDGHWQGEIWNRRKTGELYPEWLTISAVHNPQGEITHFVGVFADISTLKYAQARLDYQAHHDPLTGLPNRLLFESRLNHALDEAREESRPGAVLFIDLDRFKHINDSLGHPIGDLLLKAIAERLRDQLRDVDTVARLGGDEFIILLPGLHQESDAEHVARKLLNAFTAPFQADGHEFFVSASVGIALFPKDGDDAPTLVKNADAAMYRAKSRGRSRIEYYTRELTYLATERMALETELRRALERDELQLYYQPKLSLESGLLVGAEALVRWYHPLFGEISPERFIPLAEDCGLILPLGDWVLEHACQQMGEWQKLHAPFGPLSVNLAGAQLGQPQLIERLEQLLEQSGLEPSRLQLEITESFIMNQTEEALAVLHGLKRLGVQLAIDDFGTGYSSLSYLKRLPLDILKIDKSFIRGLPDDPHDAAITRAIIALGRSMQLTVIAEGVETEGQQSFLTHEGCEQIQGFVLSPPLPAELFASKFLKPRQPIGAPREAPV

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 8 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

8
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0071111 Catalysis of the reaction: cyclic di-3',5'-guanylate + H2O = 5'-phosphoguanylyl(3'->5')guanosine + H+.
  • GO:0052621 Catalysis of the reaction: 2 GTP = cyclic di-3',5'-guanylate + 2 diphosphate + 2 H+.
  • GO:0005525 Binding to GTP, guanosine triphosphate.
  • GO:0046872 Binding to a metal ion.
  • GO:0061939 Any process that mediates the transfer of information from one cell to another using c-di-GMP as the signal.
  • GO:0071732 Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus.
  • GO:0005515 Binding to a protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

112 records
Show feature table
Start End DB Term Name
803 970 FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein
424 548 Gene3D G3DSA:3.30.450.20 PAS domain
551 673 Gene3D G3DSA:3.30.450.20 PAS domain
986 1220 Pfam PF00563 EAL domain
986 1220 InterPro IPR001633 EAL domain
797 969 SMART SM00267 duf1_3
797 969 InterPro IPR000160 GGDEF domain
448 547 CDD cd00130 PAS
448 547 InterPro IPR000014 PAS domain
838 971 ProSiteProfiles PS50887 GGDEF domain profile.
838 971 InterPro IPR000160 GGDEF domain
809 966 CDD cd01949 GGDEF
809 966 InterPro IPR000160 GGDEF domain
1 22 SignalP_GRAM_NEGATIVE SignalP-noTM SignalP-noTM
1 20 Phobius SIGNAL_PEPTIDE Signal peptide region
28 254 Gene3D G3DSA:3.40.190.10 -
21 270 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
984 1231 SUPERFAMILY SSF141868 EAL domain-like
984 1231 InterPro IPR035919 EAL domain superfamily
980 1235 FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA
297 424 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
297 424 InterPro IPR035965 PAS domain superfamily
810 978 Gene3D G3DSA:3.30.70.270 -
810 978 InterPro IPR043128 Reverse transcriptase/Diguanylate cyclase domain
303 423 Gene3D G3DSA:3.30.450.20 PAS domain
509 559 ProSiteProfiles PS50113 PAC domain profile.
509 559 InterPro IPR000700 PAS-associated, C-terminal
665 1236 PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP
808 965 Pfam PF00990 Diguanylate cyclase, GGDEF domain
808 965 InterPro IPR000160 GGDEF domain
572 672 CDD cd00130 PAS
572 672 InterPro IPR000014 PAS domain
572 674 Pfam PF13426 PAS domain
572 674 InterPro IPR000014 PAS domain
448 548 Pfam PF13426 PAS domain
448 548 InterPro IPR000014 PAS domain
694 795 Pfam PF13426 PAS domain
694 795 InterPro IPR000014 PAS domain
286 320 Coils Coil Coil
980 1234 ProSiteProfiles PS50883 EAL domain profile.
980 1234 InterPro IPR001633 EAL domain
123 217 Gene3D G3DSA:3.40.190.10 -
979 1225 SMART SM00052 duf2_2
979 1225 InterPro IPR001633 EAL domain
39 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3
39 256 InterPro IPR001638 Solute-binding protein family 3/N-terminal domain of MltF
423 548 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
423 548 InterPro IPR035965 PAS domain superfamily
4 15 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
688 795 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
688 795 InterPro IPR035965 PAS domain superfamily
754 806 ProSiteProfiles PS50113 PAC domain profile.
754 806 InterPro IPR000700 PAS-associated, C-terminal
336 408 Pfam PF08447 PAS fold
336 408 InterPro IPR013655 PAS fold-3
16 20 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
804 968 NCBIfam TIGR00254 diguanylate cyclase (GGDEF) domain
804 968 InterPro IPR000160 GGDEF domain
268 290 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
692 794 CDD cd00130 PAS
692 794 InterPro IPR000014 PAS domain
1 3 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
979 1245 Gene3D G3DSA:3.20.20.450 EAL domain
979 1245 InterPro IPR035919 EAL domain superfamily
312 380 SMART SM00091 pas_2
312 380 InterPro IPR000014 PAS domain
438 505 SMART SM00091 pas_2
438 505 InterPro IPR000014 PAS domain
683 749 SMART SM00091 pas_2
683 749 InterPro IPR000014 PAS domain
562 629 SMART SM00091 pas_2
562 629 InterPro IPR000014 PAS domain
680 809 Gene3D G3DSA:3.30.450.20 PAS domain
687 804 NCBIfam TIGR00229 PAS domain S-box protein
687 804 InterPro IPR000014 PAS domain
308 432 NCBIfam TIGR00229 PAS domain S-box protein
308 432 InterPro IPR000014 PAS domain
436 556 NCBIfam TIGR00229 PAS domain S-box protein
436 556 InterPro IPR000014 PAS domain
560 682 NCBIfam TIGR00229 PAS domain S-box protein
560 682 InterPro IPR000014 PAS domain
510 550 SMART SM00086 pac_2
510 550 InterPro IPR001610 PAC motif
635 675 SMART SM00086 pac_2
635 675 InterPro IPR001610 PAC motif
755 797 SMART SM00086 pac_2
755 797 InterPro IPR001610 PAC motif
386 426 SMART SM00086 pac_2
386 426 InterPro IPR001610 PAC motif
681 727 ProSiteProfiles PS50112 PAS repeat profile.
681 727 InterPro IPR000014 PAS domain
271 290 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
36 255 CDD cd01007 PBP2_BvgS_HisK_like
38 258 SMART SM00062 AABind_6
38 258 InterPro IPR001638 Solute-binding protein family 3/N-terminal domain of MltF
291 1245 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
985 1224 CDD cd01948 EAL
985 1224 InterPro IPR001633 EAL domain
1 22 SignalP_GRAM_POSITIVE SignalP-TM SignalP-TM
310 369 ProSiteProfiles PS50112 PAS repeat profile.
310 369 InterPro IPR000014 PAS domain
39 256 SUPERFAMILY SSF53850 Periplasmic binding protein-like II
385 435 ProSiteProfiles PS50113 PAC domain profile.
385 435 InterPro IPR000700 PAS-associated, C-terminal
547 673 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
547 673 InterPro IPR035965 PAS domain superfamily
560 635 ProSiteProfiles PS50112 PAS repeat profile.
560 635 InterPro IPR000014 PAS domain
331 423 CDD cd00130 PAS
331 423 InterPro IPR000014 PAS domain
813 970 SUPERFAMILY SSF55073 Nucleotide cyclase
813 970 InterPro IPR029787 Nucleotide cyclase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

1 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 5M3C
X-ray 2.80 Å A,B
35.1% 809-1245
Viewing
AlphaFold PA0575
AlphaFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.684

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 6.61 0.335
2 3.76 0.144
3 2.65 0.077
4 2.26 0.056
5 1.54 0.023

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

54 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
C2E Q3SJE6 690.4 Da LogP -3.05 TPSA 349.6 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=O…
DAO C9XTL5 200.3 Da LogP 3.99 TPSA 37.3 ✓ Ro5 ✓ Clean CCCCCCCCCCCC(=O)O
GEY C9XTL5 198.3 Da LogP 3.77 TPSA 37.3 ✓ Ro5 ✓ Clean CCCCCCCCC/C=C\C(=O)O
OXY P76129 32.0 Da LogP 0.07 TPSA 34.1 ✓ Ro5 ✓ Clean O=O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.