Protein profile

PA0583

hypothetical protein

Genome: NC_002516.2

Gene: PA0583 Structure source: AlphaFold UniProt Q9I5V4
Amino acids 180
Annotations 7
Features 11
PDB binders 8
Druggability 0.554

Overview

Basic information about this protein and its source genome.

Accession
PA0583
Gene
PA0583
Status
annotated
Amino acids
180
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.554
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 6 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

6
  • GO:0003848 Catalysis of the reaction: 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine + ATP = (2-amino-4-hydroxy-7,8-dihydropteridin-6-yl)methyl diphosphate + AMP + 2 H+.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0016301 Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
  • GO:0046656 The chemical reactions and pathways resulting in the formation of folic acid, pteroylglutamic acid.
  • GO:0046654 The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.
  • GO:0009396 The chemical reactions and pathways resulting in the formation of folic acid and its derivatives.

Sequence Features

Domain/signature hits from InterPro and related databases.

11 records
Show feature table
Start End DB Term Name
6 130 NCBIfam TIGR01498 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
6 130 InterPro IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
5 172 Gene3D G3DSA:3.30.70.560 -
5 172 InterPro IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily
1 162 PANTHER PTHR43071 2-AMINO-4-HYDROXY-6-HYDROXYMETHYLDIHYDROPTERIDINE PYROPHOSPHOKINASE
5 152 SUPERFAMILY SSF55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
5 152 InterPro IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily
7 130 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)
7 130 InterPro IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
6 128 CDD cd00483 HPPK
6 128 InterPro IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA0583
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.554
5 0.201

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

79 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
5RW Q2G0Q5 291.3 Da LogP 1.66 TPSA 100.5 ✓ Ro5 ✓ Clean c1cc(ccc1CSc2[nH]c3c(n2)N=C(NC3=O)N)F
5RX Q2G0Q5 307.8 Da LogP 2.17 TPSA 100.5 ✓ Ro5 ✓ Clean c1cc(ccc1CSc2[nH]c3c(n2)C(=O)NC(=N3)N)Cl
5RY Q2G0Q5 316.3 Da LogP 1.53 TPSA 124.2 ✓ Ro5 ✓ Clean c1cc(c(cc1C#N)F)CSc2[nH]c3c(n2)C(=O)NC(=N3)N
5RZ Q2G0Q5 380.2 Da LogP 1.97 TPSA 117.5 ✓ Ro5 ✓ Clean c1cc(ccc1C(=O)CSc2[nH]c3c(n2)C(=O)NC(=N3)N)Br
APC A0A5P8YCA3 505.2 Da LogP -1.52 TPSA 269.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
B55 A0A0H3JXR3 183.2 Da LogP -0.48 TPSA 100.5 ✓ Ro5 ✓ Clean c12c([nH]c(n1)S)N=C(NC2=O)N
PH2 A0A5P8YCA3 195.2 Da LogP -1.16 TPSA 116.4 ✓ Ro5 ✓ Clean C1C(=NC2=C(N1)N=C(NC2=O)N)CO
ROI P43777 209.2 Da LogP 0.14 TPSA 116.4 ✓ Ro5 ✓ Clean CC1(C(=NC2=C(N1)N=C(NC2=O)N)O)C

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.