Protein profile

PA0612

repressor PtrB

Genome: NC_002516.2

Gene: PA0612 ptrB Structure source: AlphaFold UniProt G3XDA6
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Amino acids 66
Annotations 2
Features 15
PDB binders 0

Overview

Basic information about this protein and its source genome.

Accession
PA0612
Assembly
Pseudomonas aeruginosa PAO1, complete genome
Gene
PA0612 ptrB
Status
annotated
Amino acids
66
Structure source
AlphaFold
GO
GO:0008270 Binding to a zinc ion (Zn). GO:1900378 Any process that activates or increases the frequency, rate or extent of secondary metabolite biosynthetic process.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Unknown

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0008270 Binding to a zinc ion (Zn).
  • GO:1900378 Any process that activates or increases the frequency, rate or extent of secondary metabolite biosynthetic process.

Sequence Features

Domain/signature hits from InterPro and related databases.

15 records
Show feature table
Start End DB Term Name
35 59 ProSitePatterns PS01102 Prokaryotic dksA C4-type zinc finger.
35 59 InterPro IPR020458 Zinc finger, DksA/TraR C4-type conserved site
4 66 Gene3D G3DSA:1.20.120.910 -
3 64 NCBIfam TIGR02419 phage/conjugal plasmid C-4 type zinc finger protein, TraR family
3 64 InterPro IPR012783 Zinc finger, C4 DksA/TraR-type
35 65 SUPERFAMILY SSF57716 Glucocorticoid receptor-like (DNA-binding domain)
3 66 ProSiteProfiles PS51128 Prokaryotic dksA C4-type zinc finger profiles.
3 66 InterPro IPR000962 Zinc finger, DksA/TraR C4-type
1 65 PANTHER PTHR38777 FELS-2 PROPHAGE PROTEIN
47 59 PRINTS PR00618 DksA/TraR zinc finger signature
47 59 InterPro IPR020460 Zinc finger, DksA/TraR C4-type, bacteria
35 46 PRINTS PR00618 DksA/TraR zinc finger signature
35 46 InterPro IPR020460 Zinc finger, DksA/TraR C4-type, bacteria
33 65 Pfam PF01258 Prokaryotic dksA/traR C4-type zinc finger
33 65 InterPro IPR000962 Zinc finger, DksA/TraR C4-type

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

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Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA0612
AlphaFold — — full sequence — Viewing