Protein profile

PA0829

hydrolase

Genome: NC_002516.2

Gene: PA0829 Structure source: AlphaFold UniProt Q9I5B0
Amino acids 313
Annotations 2
Features 25
PDB binders 13
Druggability 0.927

Overview

Basic information about this protein and its source genome.

Accession
PA0829
Gene
PA0829
Status
annotated
Amino acids
313
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
29.464
Human E-value
5.98e-08
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.927
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

2 GO

Gene Ontology (GO)

2
  • GO:0016787 Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc.
  • GO:0003824 Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.

Sequence Features

Domain/signature hits from InterPro and related databases.

25 records
Show feature table
Start End DB Term Name
145 158 PRINTS PR00412 Epoxide hydrolase signature
145 158 InterPro IPR000639 Epoxide hydrolase-like
67 85 PRINTS PR00412 Epoxide hydrolase signature
67 85 InterPro IPR000639 Epoxide hydrolase-like
255 271 PRINTS PR00412 Epoxide hydrolase signature
255 271 InterPro IPR000639 Epoxide hydrolase-like
131 144 PRINTS PR00412 Epoxide hydrolase signature
131 144 InterPro IPR000639 Epoxide hydrolase-like
288 310 PRINTS PR00412 Epoxide hydrolase signature
288 310 InterPro IPR000639 Epoxide hydrolase-like
63 305 Pfam PF12697 Alpha/beta hydrolase family
63 305 InterPro IPR000073 Alpha/beta hydrolase fold-1
40 311 SUPERFAMILY SSF53474 alpha/beta-Hydrolases
40 311 InterPro IPR029058 Alpha/Beta hydrolase fold
31 312 Gene3D G3DSA:3.40.50.1820 alpha/beta hydrolase
31 312 InterPro IPR029058 Alpha/Beta hydrolase fold
131 144 PRINTS PR00111 Alpha/beta hydrolase fold signature
131 144 InterPro IPR000073 Alpha/beta hydrolase fold-1
257 271 PRINTS PR00111 Alpha/beta hydrolase fold signature
257 271 InterPro IPR000073 Alpha/beta hydrolase fold-1
145 158 PRINTS PR00111 Alpha/beta hydrolase fold signature
145 158 InterPro IPR000073 Alpha/beta hydrolase fold-1
86 101 PRINTS PR00111 Alpha/beta hydrolase fold signature
86 101 InterPro IPR000073 Alpha/beta hydrolase fold-1
37 311 PANTHER PTHR46438 ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA0829
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.927
2 0.645
3 0.474

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

163 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
12P Q6N9M9 546.7 Da LogP -0.85 TPSA 142.0 2 viol. ✓ Clean C(COCCOCCOCCOCCOCCOCCOCCOCCOCCOCCOCCO)O
6OR P9WNH5 243.1 Da LogP 1.95 TPSA 74.6 ✓ Ro5 ✓ Clean c1c(cc(c(c1Cl)O)Cl)S(=O)(=O)O
6OT P9WNH5 226.1 Da LogP 1.64 TPSA 60.2 ✓ Ro5 ✓ Clean c1c(cc(cc1Cl)Cl)S(=O)(=O)N
BEZ P47229 122.1 Da LogP 1.38 TPSA 37.3 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)O
C0E P47229 254.2 Da LogP 2.39 TPSA 74.6 ✓ Ro5 ✓ Clean c1cc(ccc1C(=O)C=CC(=C(C(=O)O)O)F)F
C1E P47229 252.7 Da LogP 2.52 TPSA 74.6 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)\C=C\C(=C(/C(=O)O)\O)\Cl
FGZ P9WNH5 207.0 Da LogP 2.40 TPSA 57.5 ✓ Ro5 ✓ Clean c1c(cc(c(c1Cl)O)Cl)C(=O)O
HPK P47229 217.2 Da LogP 0.13 TPSA 74.3 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)C\C=C\C(=O)C(=O)[O-]
HPZ P47229 218.2 Da LogP 1.95 TPSA 74.6 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)\C=C\C=C(/C(=O)O)\O
KEK P9WNH5 293.7 Da LogP 1.35 TPSA 74.3 ✓ Ro5 ✓ Clean C[C@H](\C=C\C(=O)C(=O)[O-])C(=O)CCc1ccccc1Cl
KEM P9WNH5 349.4 Da LogP 0.60 TPSA 111.6 ✓ Ro5 ✓ Clean C[C@H](\C=C\C(=O)C(=O)[O-])C(=O)CC[C@@H]1[C@H]2…
MLA P47229 104.1 Da LogP -0.45 TPSA 74.6 ✓ Ro5 ✓ Clean C(C(=O)O)C(=O)O
MLI P47229 102.0 Da LogP -3.12 TPSA 80.3 ✓ Ro5 ✓ Clean C(C(=O)[O-])C(=O)[O-]

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.