Protein profile

PA0928

sensor/response regulator hybrid protein

Genome: NC_002516.2

Gene: gacS PA0928 Structure source: Experimental + AlphaFold UniProt G3XD98
Amino acids 925
Annotations 12
Features 73
PDB binders 4
Druggability 0.787

Overview

Basic information about this protein and its source genome.

Accession
PA0928
Gene
gacS PA0928
Status
annotated
Amino acids
925
Structure source
Experimental + AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.787
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 11 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

11
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0046872 Binding to a metal ion.
  • GO:0000155 Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
  • GO:2000147 Any process that activates or increases the frequency, rate or extent of cell motility.
  • GO:1900378 Any process that activates or increases the frequency, rate or extent of secondary metabolite biosynthetic process.
  • GO:0016020 A lipid bilayer along with all the proteins and protein complexes embedded in it and attached to it.
  • GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
  • GO:0007165 The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
  • GO:0016772 Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
  • GO:0016310 The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.

Sequence Features

Domain/signature hits from InterPro and related databases.

73 records
Show feature table
Start End DB Term Name
281 344 CDD cd00082 HisKA
281 344 InterPro IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
337 509 SUPERFAMILY SSF55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
337 509 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily
395 510 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
395 510 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
227 787 PANTHER PTHR45339 HYBRID SIGNAL TRANSDUCTION HISTIDINE KINASE J
28 167 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
249 346 Gene3D G3DSA:1.10.287.130 -
290 511 ProSiteProfiles PS50109 Histidine kinase domain profile.
290 511 InterPro IPR005467 Histidine kinase domain
395 511 SMART SM00387 HKATPase_4
395 511 InterPro IPR003594 Histidine kinase/HSP90-like ATPase
657 786 Gene3D G3DSA:3.40.50.2300 -
168 187 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
764 901 SUPERFAMILY SSF47226 Histidine-containing phosphotransfer domain, HPT domain
764 901 InterPro IPR036641 HPT domain superfamily
666 785 ProSiteProfiles PS50110 Response regulatory domain profile.
666 785 InterPro IPR001789 Signal transduction response regulator, receiver domain
665 781 SMART SM00448 REC_2
665 781 InterPro IPR001789 Signal transduction response regulator, receiver domain
11 22 Phobius SIGNAL_PEPTIDE_H_REGION Hydrophobic region of a signal peptide.
436 450 PRINTS PR00344 Bacterial sensor protein C-terminal signature
436 450 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
471 489 PRINTS PR00344 Bacterial sensor protein C-terminal signature
471 489 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
454 464 PRINTS PR00344 Bacterial sensor protein C-terminal signature
454 464 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
495 508 PRINTS PR00344 Bacterial sensor protein C-terminal signature
495 508 InterPro IPR004358 Signal transduction histidine kinase-related protein, C-terminal
191 243 ProSiteProfiles PS50885 HAMP domain profile.
191 243 InterPro IPR003660 HAMP domain
284 348 Pfam PF00512 His Kinase A (phospho-acceptor) domain
284 348 InterPro IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
839 906 CDD cd00088 HPT
839 906 InterPro IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain
347 513 FunFam G3DSA:3.30.565.10:FF:000010 Sensor histidine kinase RcsC
168 187 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
820 912 ProSiteProfiles PS50894 Histidine-containing phosphotransfer (HPt) domain profile.
820 912 InterPro IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain
191 243 SMART SM00304 HAMP_11
36 167 Pfam PF09984 Single cache domain 4
36 167 InterPro IPR019247 Histidine kinase BarA, N-terminal
196 238 CDD cd06225 HAMP
1 27 Phobius SIGNAL_PEPTIDE Signal peptide region
817 913 SMART SM00073 hpt_2
817 913 InterPro IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain
248 346 FunFam G3DSA:1.10.287.130:FF:000003 Histidine kinase
191 240 SUPERFAMILY SSF158472 HAMP domain-like
400 509 CDD cd16922 HATPase_EvgS-ArcB-TorS-like
11 33 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 10 Phobius SIGNAL_PEPTIDE_N_REGION N-terminal region of a signal peptide.
188 925 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
667 781 CDD cd17546 REC_hyHK_CKI1_RcsC-like
668 781 Pfam PF00072 Response regulator receiver domain
668 781 InterPro IPR001789 Signal transduction response regulator, receiver domain
663 786 SUPERFAMILY SSF52172 CheY-like
663 786 InterPro IPR011006 CheY-like superfamily
804 918 Gene3D G3DSA:1.20.120.160 HPT domain
804 918 InterPro IPR036641 HPT domain superfamily
283 348 SMART SM00388 HisKA_10
283 348 InterPro IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain
826 907 Pfam PF01627 Hpt domain
826 907 InterPro IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain
162 248 Gene3D G3DSA:6.10.340.10 -
347 515 Gene3D G3DSA:3.30.565.10 -
347 515 InterPro IPR036890 Histidine kinase/HSP90-like ATPase superfamily
224 255 Coils Coil Coil
189 239 Pfam PF00672 HAMP domain
189 239 InterPro IPR003660 HAMP domain
23 27 Phobius SIGNAL_PEPTIDE_C_REGION C-terminal region of a signal peptide.
269 349 SUPERFAMILY SSF47384 Homodimeric domain of signal transducing histidine kinase
269 349 InterPro IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

4 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 7Z8N
X-ray 2.64 Å A,B,C,D
31.7% 220-512
Viewing
PDB 7QZO
X-ray 1.45 Å A,B
14.3% 662-793
Loaded
PDB 7QZ2
X-ray 1.87 Å A,B
14.3% 662-793
Loaded
PDB 7N0E
X-ray 2.30 Å A
6.5% 285-344
Loaded
AlphaFold PA0928
AlphaFold full sequence Loaded
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Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

54 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
ANP Q9ABT2 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
BEF O22267 66.0 Da LogP 0.88 TPSA 0.0 ✓ Ro5 ✓ Clean [Be-](F)(F)F
BTB P0AEC6 209.2 Da LogP -3.01 TPSA 104.4 ✓ Ro5 ✓ Clean C(CO)N(CCO)C(CO)(CO)CO
PG0 P71815 120.1 Da LogP -0.36 TPSA 38.7 ✓ Ro5 ✓ Clean COCCOCCO

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.