Protein profile

PA0944

phosphoribosylglycinamide formyltransferase

Genome: NC_002516.2

Gene: PA0944 purN Structure source: AlphaFold UniProt Q9I514
Amino acids 222
Annotations 8
Features 15
PDB binders 23
Druggability 0.693

Overview

Basic information about this protein and its source genome.

Accession
PA0944
Gene
PA0944 purN
Status
annotated
Amino acids
222
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
52.414
Human E-value
2.93e-46
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.693
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 7 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

7
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0004644 Catalysis of the reaction: 10-formyltetrahydrofolate + N1-(5-phospho-D-ribosyl)glycinamide = tetrahydrofolate + N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide.
  • GO:0006189 The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
  • GO:0071978 Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.
  • GO:0044010 A process in which planktonically growing microorganisms of the same species grow at a liquid-air interface or on a solid substrate under the flow of a liquid and produce extracellular polymers that facilitate matrix formation, resulting in a change in the organisms' growth rate and gene transcription.
  • GO:0009058 A cellular process consisting of the biochemical pathways by which a living organism synthesizes chemical substances. This typically represents the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.

Sequence Features

Domain/signature hits from InterPro and related databases.

15 records
Show feature table
Start End DB Term Name
6 191 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN].
6 191 InterPro IPR004607 Phosphoribosylglycinamide formyltransferase
6 204 SUPERFAMILY SSF53328 Formyltransferase
6 204 InterPro IPR036477 Formyl transferase, N-terminal domain superfamily
6 184 Pfam PF00551 Formyl transferase
6 184 InterPro IPR002376 Formyl transferase, N-terminal
6 188 CDD cd08645 FMT_core_GART
6 188 InterPro IPR004607 Phosphoribosylglycinamide formyltransferase
137 160 ProSitePatterns PS00373 Phosphoribosylglycinamide formyltransferase active site.
137 160 InterPro IPR001555 Phosphoribosylglycinamide formyltransferase, active site
2 206 Gene3D G3DSA:3.40.50.170 -
6 194 NCBIfam TIGR00639 phosphoribosylglycinamide formyltransferase
6 194 InterPro IPR004607 Phosphoribosylglycinamide formyltransferase
4 203 PANTHER PTHR43369 PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
5 216 FunFam G3DSA:3.40.50.170:FF:000005 Phosphoribosylglycinamide formyltransferase

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA0944
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.693
2 0.291

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

147 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
138 P08179 752.6 Da LogP -2.34 TPSA 353.5 3 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)[C@@](Cc2…
3YA P22102 472.5 Da LogP 2.18 TPSA 175.5 ✓ Ro5 ✓ Clean c1cc(ccc1CCCCc2cc3c(s2)NC(=NC3=O)N)C(=O)N[C@@H]…
3YB P22102 461.5 Da LogP 1.51 TPSA 191.3 1 viol. ✓ Clean c1c(csc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)CCCCc2cc3c…
3YC P22102 461.5 Da LogP 1.51 TPSA 191.3 1 viol. ✓ Clean c1c(csc1CCCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)N[C@@…
3YD P22102 407.4 Da LogP 0.76 TPSA 191.3 1 viol. ✓ Clean c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCC(=O)N[C@@H](CC…
3YE P22102 421.5 Da LogP 1.15 TPSA 191.3 1 viol. ✓ Clean c1c([nH]c2c1C(=O)NC(=N2)N)CCCCCCCC(=O)N[C@@H](C…
3YF P22102 447.5 Da LogP 1.12 TPSA 191.3 1 viol. ✓ Clean c1c(csc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)CCCc2cc3c(…
3YG P22102 447.5 Da LogP 1.12 TPSA 191.3 1 viol. ✓ Clean c1c(csc1CCCc2cc3c([nH]2)N=C(NC3=O)N)C(=O)N[C@@H…
4DW P22102 425.4 Da LogP 0.44 TPSA 191.3 1 viol. ✓ Clean c1cc(ccc1CCc2c[nH]c3c2C(=O)N=C(N3)N)C(=O)N[C@@H…
83A P22102 442.4 Da LogP 0.54 TPSA 203.3 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCCc2cc3c…
DXZ P22102 477.5 Da LogP 1.41 TPSA 201.5 1 viol. ✓ Clean CS[C@H](CCCC1=C(N=C(NC1=O)N)N)c2ccc(cc2)C(=O)N[…
DZF P08179 440.4 Da LogP 0.56 TPSA 200.4 1 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NCc2cc3c(…
G71 P22102 461.5 Da LogP 1.51 TPSA 191.3 1 viol. ✓ Clean c1cc(sc1CCCCc2cc3c([nH]2)NC(=NC3=O)N)C(=O)N[C@@…
G94 P22102 447.5 Da LogP 1.12 TPSA 191.3 1 viol. ✓ Clean c1cc(sc1CCCc2cc3c([nH]2)NC(=NC3=O)N)C(=O)N[C@@H…
GAR P22102 284.2 Da LogP -4.65 TPSA 177.2 ✓ Ro5 ✓ Clean C([C@@H]1[C@H]([C@H]([C@@H](O1)NC(=O)CN)O)O)OP(…
KEU P22102 549.5 Da LogP -0.91 TPSA 237.3 2 viol. ✓ Clean c1cc(ccc1[C@@H](CCCC2C(NC(NC2=O)N)N)C(C(F)(F)F)…
KT3 P22102 803.7 Da LogP -0.56 TPSA 375.0 3 viol. ✓ Clean c1cc(ccc1[C@H](CCCc2c(nc(nc2O)N)N)C(C(F)(F)F)(O…
KT5 P22102 1061.9 Da LogP -1.86 TPSA 507.8 3 viol. ✓ Clean c1cc(ccc1[C@H](CCCc2c(nc(nc2O)N)N)C(C(F)(F)F)(O…
NHE Q83AY9 207.3 Da LogP 0.80 TPSA 66.4 ✓ Ro5 ✓ Clean C1CCC(CC1)NCCS(=O)(=O)O
NHR P08179 482.4 Da LogP 1.38 TPSA 213.0 1 viol. ✓ Clean c1cc(ccc1[C@@H](Cc2ccc3c(c2)c(nc(n3)N)O)C(=O)O)…
NHS P08179 482.4 Da LogP 0.96 TPSA 212.8 1 viol. ✓ Clean c1cc(ccc1[C@H](Cc2ccc3c(c2)C(=O)NC(=N3)N)C(=O)O…
U89 P08179 715.7 Da LogP -0.31 TPSA 317.7 3 viol. ✓ Clean c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)N(CCCC2=C…
V97 P22102 478.6 Da LogP 2.24 TPSA 175.5 ✓ Ro5 ✓ Clean c1cc(sc1CCCCc2cc3c(s2)N=C(NC3=O)N)C(=O)N[C@@H](…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.