Protein profile

PA1079

flagellar basal body rod modification protein

Genome: NC_002516.2

Gene: flgD PA1079 Structure source: Experimental + AlphaFold UniProt Q9I4Q0
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Amino acids 237
Annotations 1
Features 9
PDB binders 0
Druggability 0.844

Overview

Basic information about this protein and its source genome.

Accession
PA1079
Assembly
Pseudomonas aeruginosa PAO1, complete genome
Gene
flgD PA1079
Status
annotated
Amino acids
237
Structure source
Experimental + AlphaFold
GO
GO:0044781 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a bacterial-type flagellum, a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope which functions in cell motility.

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Extracellular

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.844
Structure –
Pocket –

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 GO

Gene Ontology (GO)

1
  • GO:0044781 A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a bacterial-type flagellum, a motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope which functions in cell motility.

Sequence Features

Domain/signature hits from InterPro and related databases.

9 records
Show feature table
Start End DB Term Name
98 230 Gene3D G3DSA:2.30.30.910 -
1 36 MobiDBLite mobidb-lite consensus disorder prediction
22 89 Pfam PF03963 Flagellar hook capping protein - N-terminal region
22 89 InterPro IPR005648 Flagellar hook capping protein
114 200 Gene3D G3DSA:2.60.40.4070 -
119 189 Pfam PF13860 FlgD Ig-like domain
119 189 InterPro IPR025965 FlgD/Vpr, Ig-like domain
97 233 Pfam PF13861 FlgD Tudor-like domain
97 233 InterPro IPR025963 FlgD Tudor-like domain

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

1 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 3OSV
X-ray 2.35 Å A,B,C,D
58.2% 100-237
PDBe RCSB PDBj File
Viewing
AlphaFold PA1079
AlphaFold — — full sequence — Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
3 0.844