Protein profile

PA1181

sensor protein

Genome: NC_002516.2

Gene: PA1181 Structure source: AlphaFold UniProt Q9I4F7
Amino acids 1120
Annotations 4
Features 107
PDB binders 3
Druggability 0.865

Overview

Basic information about this protein and its source genome.

Accession
PA1181
Gene
PA1181
Status
annotated
Amino acids
1120
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
CytoplasmicMembrane

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.865
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4
  • GO:0005886 The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
  • GO:0052621 Catalysis of the reaction: 2 GTP = cyclic di-3',5'-guanylate + 2 diphosphate + 2 H+.
  • GO:0016301 Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
  • GO:0005515 Binding to a protein.

Sequence Features

Domain/signature hits from InterPro and related databases.

107 records
Show feature table
Start End DB Term Name
309 412 CDD cd00130 PAS
286 1120 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
555 624 SMART SM00091 pas_2
555 624 InterPro IPR000014 PAS domain
300 366 SMART SM00091 pas_2
300 366 InterPro IPR000014 PAS domain
427 495 SMART SM00091 pas_2
427 495 InterPro IPR000014 PAS domain
674 848 Gene3D G3DSA:3.30.70.270 -
674 848 InterPro IPR043128 Reverse transcriptase/Diguanylate cyclase domain
181 191 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
62 78 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
39 61 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
56 61 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
255 265 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
81 103 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
631 683 ProSiteProfiles PS50113 PAC domain profile.
631 683 InterPro IPR000700 PAS-associated, C-terminal
10 32 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
193 215 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
372 424 ProSiteProfiles PS50113 PAC domain profile.
372 424 InterPro IPR000700 PAS-associated, C-terminal
439 540 CDD cd00130 PAS
439 540 InterPro IPR000014 PAS domain
12 32 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
146 156 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
296 435 Gene3D G3DSA:3.30.450.20 PAS domain
266 285 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
104 122 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
192 219 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
544 672 Gene3D G3DSA:3.30.450.20 PAS domain
498 543 Gene3D G3DSA:2.10.70.100 -
220 230 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
84 103 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
500 552 ProSiteProfiles PS50113 PAC domain profile.
500 552 InterPro IPR000700 PAS-associated, C-terminal
553 626 ProSiteProfiles PS50112 PAS repeat profile.
553 626 InterPro IPR000014 PAS domain
280 426 PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP
866 1104 CDD cd01948 EAL
866 1104 InterPro IPR001633 EAL domain
866 1100 Pfam PF00563 EAL domain
866 1100 InterPro IPR001633 EAL domain
415 435 Coils Coil Coil
859 1114 ProSiteProfiles PS50883 EAL domain profile.
859 1114 InterPro IPR001633 EAL domain
33 37 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
158 180 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
865 1112 SUPERFAMILY SSF141868 EAL domain-like
865 1112 InterPro IPR035919 EAL domain superfamily
123 145 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
1 28 ProSiteProfiles PS51257 Prokaryotic membrane lipoprotein lipid attachment site profile.
309 412 InterPro IPR000014 PAS domain
563 675 Pfam PF08448 PAS fold
563 675 InterPro IPR013656 PAS fold-4
564 671 CDD cd00130 PAS
564 671 InterPro IPR000014 PAS domain
231 254 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
307 418 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
307 418 InterPro IPR035965 PAS domain superfamily
15 289 Pfam PF05231 MASE1
15 289 InterPro IPR007895 MASE1
687 843 CDD cd01949 GGDEF
687 843 InterPro IPR000160 GGDEF domain
438 496 Gene3D G3DSA:3.30.450.20 PAS domain
539 668 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
539 668 InterPro IPR035965 PAS domain superfamily
685 842 Pfam PF00990 Diguanylate cyclase, GGDEF domain
685 842 InterPro IPR000160 GGDEF domain
123 145 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
157 180 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
299 421 NCBIfam TIGR00229 PAS domain S-box protein
299 421 InterPro IPR000014 PAS domain
552 681 NCBIfam TIGR00229 PAS domain S-box protein
552 681 InterPro IPR000014 PAS domain
674 846 SMART SM00267 duf1_3
674 846 InterPro IPR000160 GGDEF domain
79 83 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region.
265 284 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
450 537 Pfam PF08447 PAS fold
450 537 InterPro IPR013655 PAS fold-3
324 406 Pfam PF08447 PAS fold
324 406 InterPro IPR013655 PAS fold-3
858 1105 SMART SM00052 duf2_2
858 1105 InterPro IPR001633 EAL domain
679 847 FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein
435 544 SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain)
435 544 InterPro IPR035965 PAS domain superfamily
857 1114 Gene3D G3DSA:3.20.20.450 EAL domain
857 1114 InterPro IPR035919 EAL domain superfamily
298 368 ProSiteProfiles PS50112 PAS repeat profile.
298 368 InterPro IPR000014 PAS domain
1 11 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm.
38 55 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane.
373 415 SMART SM00086 pac_2
373 415 InterPro IPR001610 PAC motif
501 543 SMART SM00086 pac_2
501 543 InterPro IPR001610 PAC motif
632 674 SMART SM00086 pac_2
632 674 InterPro IPR001610 PAC motif
230 252 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane.
715 848 ProSiteProfiles PS50887 GGDEF domain profile.
715 848 InterPro IPR000160 GGDEF domain
690 846 SUPERFAMILY SSF55073 Nucleotide cyclase
690 846 InterPro IPR029787 Nucleotide cyclase
683 845 NCBIfam TIGR00254 diguanylate cyclase (GGDEF) domain
683 845 InterPro IPR000160 GGDEF domain

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

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Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA1181
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.692
10 0.246

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

53 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
C2E Q3SJE6 690.4 Da LogP -3.05 TPSA 349.6 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=O…
DAO C9XTL5 200.3 Da LogP 3.99 TPSA 37.3 ✓ Ro5 ✓ Clean CCCCCCCCCCCC(=O)O
GEY C9XTL5 198.3 Da LogP 3.77 TPSA 37.3 ✓ Ro5 ✓ Clean CCCCCCCCC/C=C\C(=O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.