Protein profile

PA1197

NAD-dependent protein deacylase

Genome: NC_002516.2

Gene: cobB2 PA1197 Structure source: AlphaFold UniProt Q9I4E1
Amino acids 256
Annotations 6
Features 11
PDB binders 21
Druggability 0.826

Overview

Basic information about this protein and its source genome.

Accession
PA1197
Gene
cobB2 PA1197
Status
annotated
Amino acids
256
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
37.857
Human E-value
1.75e-21
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.826
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 5 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

5
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0046872 Binding to a metal ion.
  • GO:0070403 Binding to the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
  • GO:0003950 Catalysis of the reaction: NAD+ + (ADP-D-ribosyl)(n)-acceptor = nicotinamide + (ADP-D-ribosyl)(n+1)-acceptor.
  • GO:0034979 Catalysis of the reaction: N(6)-acetyl-L-lysyl-[protein] + NAD+ + H2O = L-lysyl-[protein] + 2''-O-acetyl-ADP-D-ribose + nicotinamide. This reaction transfers an acetyl group from a protein to NAD, producing nicotinamide.

Sequence Features

Domain/signature hits from InterPro and related databases.

11 records
Show feature table
Start End DB Term Name
25 202 Pfam PF02146 Sir2 family
25 202 InterPro IPR003000 Sirtuin family
16 248 Gene3D G3DSA:3.40.50.1220 -
8 253 PANTHER PTHR47651 NAD-DEPENDENT HISTONE DEACETYLASE HST4
19 238 CDD cd01407 SIR2-fam
1 256 ProSiteProfiles PS50305 Sirtuin catalytic domain profile.
1 256 InterPro IPR026590 Sirtuin family, catalytic core domain
6 254 SUPERFAMILY SSF52467 DHS-like NAD/FAD-binding domain
6 254 InterPro IPR029035 DHS-like NAD/FAD-binding domain superfamily
34 175 Gene3D G3DSA:3.30.1600.10 SIR2/SIRT2 'Small Domain'
34 175 InterPro IPR026591 Sirtuin, catalytic core small domain superfamily

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA1197
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.826

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

171 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
0L1 Q6DHI5 146.1 Da LogP 0.72 TPSA 74.6 ✓ Ro5 ✓ Clean C(CCC(=O)O)CC(=O)O
3NP Q6DHI5 119.1 Da LogP -0.26 TPSA 80.4 ✓ Ro5 ✓ Clean C(C[N+](=O)[O-])C(=O)O
APR O28597 559.3 Da LogP -3.28 TPSA 291.5 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
BJW Q6DHI5 1179.1 Da LogP 2.19 TPSA 421.9 3 viol. ✓ Clean CC(C)NC(=O)[C@H](Cc1c[nH]c2c1cccc2)NC(=O)[C@H](…
BV8 Q6DHI5 1180.1 Da LogP 1.08 TPSA 445.3 3 viol. ✓ Clean CC(C)NC(=O)[C@H](Cc1c[nH]c2c1cccc2)NC(=O)[C@H](…
BVT Q6DHI5 1180.1 Da LogP 0.96 TPSA 434.0 3 viol. ✓ Clean CC(C)NC(=O)[C@H](Cc1c[nH]c2c1cccc2)NC(=O)[C@H](…
CNA Q9NXA8 662.5 Da LogP -2.35 TPSA 309.0 3 viol. ✓ Clean c1cc(c[n+](c1)[C@@H]2C[C@@H]([C@H]([C@H]2O)O)CO…
DZK Q6DHI5 240.3 Da LogP 1.85 TPSA 74.6 ✓ Ro5 ✓ Clean c1ccc(cc1)CS[C@@H](CC(=O)O)C(=O)O
E9N Q6DHI5 240.3 Da LogP 1.85 TPSA 74.6 ✓ Ro5 ✓ Clean c1ccc(cc1)CS[C@H](CC(=O)O)C(=O)O
F9V Q6DHI5 194.2 Da LogP 1.33 TPSA 74.6 ✓ Ro5 ✓ Clean c1ccc(cc1)C(CC(=O)O)C(=O)O
GUA Q6DHI5 132.1 Da LogP 0.33 TPSA 74.6 ✓ Ro5 ✓ Clean C(CC(=O)O)CC(=O)O
GZB Q6DHI5 179.2 Da LogP 0.50 TPSA 66.4 ✓ Ro5 ✓ Clean c1ccc(cc1)C(=O)NCC(=O)O
HLY Q6DHI5 290.3 Da LogP -0.70 TPSA 149.9 ✓ Ro5 ✓ Clean C[C@@](CC(=O)NCCCC[C@@H](C(=O)O)N)(CC(=O)O)O
JO3 Q6DHI5 132.1 Da LogP 0.18 TPSA 74.6 ✓ Ro5 ✓ Clean CC(CC(=O)O)C(=O)O
NCA O30124 122.1 Da LogP 0.18 TPSA 56.0 ✓ Ro5 ✓ Clean c1cc(cnc1)C(=O)N
NX6 Q6DHI5 267.2 Da LogP 0.84 TPSA 112.9 ✓ Ro5 ✓ Clean c1ccc(cc1)COC(=O)N[C@@H](CC(=O)O)C(=O)O
OAD O28597 601.4 Da LogP -2.71 TPSA 297.6 3 viol. ✓ Clean CC(=O)O[C@@H]1[C@@H]([C@H](O[C@@H]1O)CO[P@@](=O…
SU8 Q6DHI5 174.2 Da LogP 1.35 TPSA 74.6 ✓ Ro5 ✓ Clean CCCC[C@H](CC(=O)O)C(=O)O
SUH Q6DHI5 132.1 Da LogP 0.18 TPSA 74.6 ✓ Ro5 ✓ Clean C[C@@H](CC(=O)O)C(=O)O
SVR Q9NXA8 1297.3 Da LogP 6.74 TPSA 483.7 4 viol. ✓ Clean Cc1ccc(cc1NC(=O)c2cccc(c2)NC(=O)Nc3cccc(c3)C(=O…
WOC Q6DHI5 146.1 Da LogP 0.57 TPSA 74.6 ✓ Ro5 ✓ Clean CC(C)(CC(=O)O)C(=O)O

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.