Target Pathogen

Overview

Basic information about this protein and its source genome.

Accession: PA1380
Assembly: Pseudomonas aeruginosa PAO1, complete genome
Gene: PA1380
Status: annotated
Amino acids: 321
Structure source: AlphaFold

GO

GO:0001216 A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets. GO:0043565 Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.

Target profile

Computed evidence for target prioritization.

Human off-target: No hit
Gut microbiome off-target: hit
Essential (DEG): N
Localization: Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.859

Structure –

Pocket –

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

4 GO

Gene Ontology (GO)

4

GO:0001216 A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets.
GO:0043565 Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.

Sequence Features

Domain/signature hits from InterPro and related databases.

14 records

Show feature table

Start	End	DB	Term	Name
201	249	SUPERFAMILY	SSF46689	Homeodomain-like
201	249	InterPro	IPR009057	Homeobox-like domain superfamily
253	303	SUPERFAMILY	SSF46689	Homeodomain-like
253	303	InterPro	IPR009057	Homeobox-like domain superfamily
38	187	Pfam	PF06719	AraC-type transcriptional regulator N-terminus
38	187	InterPro	IPR009594	Transcription regulator HTH, AraC, N-terminal
222	297	Pfam	PF12833	Helix-turn-helix domain
222	297	InterPro	IPR018060	DNA binding HTH domain, AraC-type
14	308	PANTHER	PTHR43436	ARAC-FAMILY TRANSCRIPTIONAL REGULATOR
203	301	ProSiteProfiles	PS01124	Bacterial regulatory proteins, araC family DNA-binding domain profile.
203	301	InterPro	IPR018060	DNA binding HTH domain, AraC-type
216	299	SMART	SM00342	aracneu4
216	299	InterPro	IPR018060	DNA binding HTH domain, AraC-type
199	303	Gene3D	G3DSA:1.10.10.60	-

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry	Method	Resolution	Chain	Coverage	Links	Status
AlphaFold PA1380	AlphaFold	—	—	full sequence	—	Viewing

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Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET	Sticks	Spheres	Surfaces	Druggability	Labels	Zoom	Positions
1				0.859

PA1380