Protein profile

PA1455

flagellar biosynthesis sigma factor FliA

Genome: NC_002516.2

Gene: PA1455 rpoF fliA Structure source: AlphaFold UniProt P29248
Amino acids 247
Annotations 8
Features 35
PDB binders 12
Druggability 0.699

Overview

Basic information about this protein and its source genome.

Accession
PA1455
Gene
PA1455 rpoF fliA
Status
annotated
Amino acids
247
Structure source
AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
N
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.699
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

MTAASGVRMYSKAQAQNSQEQLIQRYAPLVKRIAYHLLGRLPASVQVEDLMQAGMIGLLEAAKKYDAGKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVTDAIRAIEARTGRDAKDHEVAAELQLSLEDYYGILSDTQGSRLYSFDDLLQDGEHGLPEDTSLSHNEPIHGLLDERFQAALADAIAKLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRARLADWRSA

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

8 GO

Gene Ontology (GO)

8
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
  • GO:0003899 Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
  • GO:0016987 Sigma factors act as the promoter specificity subunit of eubacterial and plant plastid multisubunit RNA polymerases, whose core subunit composition is often described as alpha(2)-beta-beta-prime. Although sigma does not bind DNA on its own, when combined with the core to form the holoenzyme, the sigma factor binds specifically to promoter elements. The sigma subunit is released once elongation begins.
  • GO:0006352 The initial step of transcription, consisting of the assembly of the RNA polymerase preinitiation complex (PIC) at a gene promoter, as well as the formation of the first few bonds of the RNA transcript. Transcription initiation includes abortive initiation events, which occur when the first few nucleotides are repeatedly synthesized and then released, and ends when promoter clearance takes place.
  • GO:2000147 Any process that activates or increases the frequency, rate or extent of cell motility.
  • GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
  • GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.

Sequence Features

Domain/signature hits from InterPro and related databases.

35 records
Show feature table
Start End DB Term Name
103 166 Pfam PF04539 Sigma-70 region 3
103 166 InterPro IPR007624 RNA polymerase sigma-70 region 3
163 244 SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
163 244 InterPro IPR013324 RNA polymerase sigma factor, region 3/4-like
6 91 Gene3D G3DSA:1.10.1740.10 -
49 62 ProSitePatterns PS00715 Sigma-70 factors family signature 1.
49 62 InterPro IPR000943 RNA polymerase sigma-70
194 206 PRINTS PR00046 Major sigma-70 factor signature
194 206 InterPro IPR000943 RNA polymerase sigma-70
211 226 PRINTS PR00046 Major sigma-70 factor signature
211 226 InterPro IPR000943 RNA polymerase sigma-70
226 237 PRINTS PR00046 Major sigma-70 factor signature
226 237 InterPro IPR000943 RNA polymerase sigma-70
49 62 PRINTS PR00046 Major sigma-70 factor signature
22 241 NCBIfam TIGR02479 FliA/WhiG family RNA polymerase sigma factor
22 241 InterPro IPR012845 RNA polymerase sigma factor, FliA/WhiG
14 245 PANTHER PTHR30385 SIGMA FACTOR F FLAGELLAR
19 241 NCBIfam TIGR02937 sigma-70 family RNA polymerase sigma factor
19 241 InterPro IPR014284 RNA polymerase sigma-70 like domain
93 243 FunFam G3DSA:1.20.140.160:FF:000001 RNA polymerase sigma factor FliA
7 91 FunFam G3DSA:1.10.1740.10:FF:000002 RNA polymerase sigma factor FliA
10 94 SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors
10 94 InterPro IPR013325 RNA polymerase sigma factor, region 2
184 238 CDD cd06171 Sigma70_r4
93 243 Gene3D G3DSA:1.20.140.160 -
1 246 PIRSF PIRSF000770 SigK_SigE
1 246 InterPro IPR000943 RNA polymerase sigma-70
8 244 Hamap MF_00962 RNA polymerase sigma factor FliA [fliA].
8 244 InterPro IPR028617 RNA polymerase sigma factor FliA
22 94 Pfam PF04542 Sigma-70 region 2
22 94 InterPro IPR007627 RNA polymerase sigma-70 region 2
190 239 Pfam PF04545 Sigma-70, region 4
190 239 InterPro IPR007630 RNA polymerase sigma-70 region 4
96 163 SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
96 163 InterPro IPR013324 RNA polymerase sigma factor, region 3/4-like

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA1455
AlphaFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.699

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

62 records
Chemistry signal

Structural ligand evidence is available for this target.

Direct evidence 0 62 via homologs
Structural ligands 12 0 loaded crystals
Bioactive compounds 0 50 ZINC candidates
Drug-like & clean 45 8 PAINS alerts

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
118 P00579 430.2 Da LogP 3.06 TPSA 0.0 ✓ Ro5 ✓ Clean c1ccc(cc1)[Sb+](c2ccccc2)(c3ccccc3)c4ccccc4
1N7 P00579 631.9 Da LogP 2.20 TPSA 164.4 2 viol. ✓ Clean C[C@H](CCC(=O)NCCC[N+](C)(C)CC(CS(=O)(=O)O)O)[C…
1RL P00579 900.0 Da LogP 6.67 TPSA 216.4 3 viol. ✓ Clean CCN(CC)CCOc1cccc2c1N=C3c4c5c(c(c6c4C(=O)[C@](O6…
1RM P00579 1035.2 Da LogP 6.62 TPSA 237.5 3 viol. ✓ Clean Cc1c(c2c3c4c1O[C@@](C4=O)(O/C=C/[C@@H]([C@H]([C…
88G P9WGI1 358.4 Da LogP 3.97 TPSA 58.2 ✓ Ro5 ✓ Clean Cc1ccccc1NC(=O)[C@@H](Cc2ccccc2)NC(=O)c3ccccc3
C2E A0A023X3C8 690.4 Da LogP -3.05 TPSA 349.6 3 viol. ✓ Clean c1nc2c(n1[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@@](=O…
FI8 P9WGI1 1058.1 Da LogP 6.23 TPSA 266.7 4 viol. ✓ Clean CCc1c(c(c(c(c1Cl)O)Cl)O)C(=O)O[C@@H]2[C@H](O[C@…
KNG A0QW02 986.1 Da LogP 5.64 TPSA 292.6 4 viol. Alert Cc1c(c2c3c(cc(c2O)NC(=O)/C(=C\CC[C@@H]([C@@H]([…
RBT Q5SKW1 847.0 Da LogP 4.62 TPSA 205.5 2 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
RFP A0QW02 823.0 Da LogP 4.34 TPSA 220.1 3 viol. Alert Cc1c(c2c3c4c1O[C@@](C4=O)(O\C=C\[C@@H]([C@H]([C…
RFV Q5SKW1 699.8 Da LogP 4.60 TPSA 204.5 3 viol. ✓ Clean Cc1c(c2c3c(cc(c2O)NC(=O)C(=C/C=C/[C@@H]([C@@H](…
SRN A0QW02 807.0 Da LogP 6.80 TPSA 161.2 2 viol. ✓ Clean C[C@H]1[C@H]2C\C=C\[C@H]3[C@@H]([C@H]4C[C@@H](O…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.