Protein profile

PA1533

nucleoid-associated protein

Genome: NC_002516.2

Gene: PA1533 Structure source: AlphaFold UniProt Q9I3I0
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Amino acids 108
Annotations 3
Features 18
PDB binders 0
Druggability 0.938

Overview

Basic information about this protein and its source genome.

Accession
PA1533
Assembly
Pseudomonas aeruginosa PAO1, complete genome
Gene
PA1533
Status
annotated
Amino acids
108
Structure source
AlphaFold
GO
GO:0043590 The region of a bacterial cell to which the DNA is confined. GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes. GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Target profile

Computed evidence for target prioritization.

Human off-target
No hit
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Unknown

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.938
Structure –
Pocket –

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0043590 The region of a bacterial cell to which the DNA is confined.
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

Sequence Features

Domain/signature hits from InterPro and related databases.

18 records
Show feature table
Start End DB Term Name
1 108 FunFam G3DSA:3.30.1310.10:FF:000001 Nucleoid-associated protein YbaB
10 102 SUPERFAMILY SSF82607 YbaB-like
10 102 InterPro IPR036894 Nucleoid-associated protein YbaB-like domain superfamily
1 108 Gene3D G3DSA:3.30.1310.10 -
1 108 InterPro IPR036894 Nucleoid-associated protein YbaB-like domain superfamily
4 104 PANTHER PTHR33449 NUCLEOID-ASSOCIATED PROTEIN YBAB
4 104 InterPro IPR004401 Nucleoid-associated protein YbaB/EbfC
14 30 MobiDBLite mobidb-lite consensus disorder prediction
6 33 Coils Coil Coil
1 30 MobiDBLite mobidb-lite consensus disorder prediction
2 108 PIRSF PIRSF004555 UCP004555
2 108 InterPro IPR004401 Nucleoid-associated protein YbaB/EbfC
4 97 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB].
4 97 InterPro IPR004401 Nucleoid-associated protein YbaB/EbfC
10 98 Pfam PF02575 YbaB/EbfC DNA-binding family
10 98 InterPro IPR004401 Nucleoid-associated protein YbaB/EbfC
3 104 NCBIfam TIGR00103 YbaB/EbfC family nucleoid-associated protein
3 104 InterPro IPR004401 Nucleoid-associated protein YbaB/EbfC

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
AlphaFold PA1533
AlphaFold — — full sequence — Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.938