Amino acids
907
Annotations
5
Features
32
PDB binders
5
Druggability
0.837
Overview
Basic information about this protein and its source genome.
- Accession
- PA1760
- Gene
- PA1760
- Status
- annotated
- Amino acids
- 907
- Structure source
- AlphaFold
GO
GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
GO:0000976 Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005515 Binding to a protein.
Target profile
Computed evidence for target prioritization.
- Human off-target
- No hit
- Gut microbiome off-target
- hit
- Essential (DEG)
- N
- Localization
- Cytoplasmic
Selected Druggability evidence
Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.
FPocket
0.837
Sequence
Primary amino-acid sequence viewer.
Functional Annotations
Enzyme classification and Gene Ontology terms linked to this protein.
5 GO
Gene Ontology (GO)
5- GO:0003700 A transcription regulator activity that modulates transcription of gene sets via selective and non-covalent binding to a specific double-stranded genomic DNA sequence (sometimes referred to as a motif) within a cis-regulatory region. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
- GO:0000976 Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
- GO:0006355 Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
- GO:0003677 Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
- GO:0005515 Binding to a protein.
Sequence Features
Domain/signature hits from InterPro and related databases.
32 records
Show feature table
| Start | End | DB | Term | Name |
|---|---|---|---|---|
| 840 | 904 | SUPERFAMILY | SSF46894 | C-terminal effector domain of the bipartite response regulators |
| 840 | 904 | InterPro | IPR016032 | Signal transduction response regulator, C-terminal effector |
| 39 | 170 | Pfam | PF13191 | AAA ATPase domain |
| 39 | 170 | InterPro | IPR041664 | Orc1-like, AAA ATPase domain |
| 471 | 803 | Pfam | PF17874 | MalT-like TPR region |
| 471 | 803 | InterPro | IPR041617 | MalT-like TPR region |
| 6 | 903 | PANTHER | PTHR43214 | TWO-COMPONENT RESPONSE REGULATOR |
| 6 | 903 | InterPro | IPR039420 | Transcriptional regulatory protein WalR-like |
| 462 | 827 | Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain |
| 462 | 827 | InterPro | IPR011990 | Tetratricopeptide-like helical domain superfamily |
| 837 | 902 | ProSiteProfiles | PS50043 | LuxR-type HTH domain profile. |
| 837 | 902 | InterPro | IPR000792 | Transcription regulator LuxR, C-terminal |
| 844 | 858 | PRINTS | PR00038 | LuxR bacterial regulatory protein HTH signature |
| 844 | 858 | InterPro | IPR000792 | Transcription regulator LuxR, C-terminal |
| 874 | 886 | PRINTS | PR00038 | LuxR bacterial regulatory protein HTH signature |
| 874 | 886 | InterPro | IPR000792 | Transcription regulator LuxR, C-terminal |
| 858 | 874 | PRINTS | PR00038 | LuxR bacterial regulatory protein HTH signature |
| 858 | 874 | InterPro | IPR000792 | Transcription regulator LuxR, C-terminal |
| 30 | 260 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases |
| 30 | 260 | InterPro | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| 845 | 900 | CDD | cd06170 | LuxR_C_like |
| 845 | 900 | InterPro | IPR000792 | Transcription regulator LuxR, C-terminal |
| 835 | 907 | Gene3D | G3DSA:1.10.10.10 | - |
| 835 | 907 | InterPro | IPR036388 | Winged helix-like DNA-binding domain superfamily |
| 845 | 896 | Pfam | PF00196 | Bacterial regulatory proteins, luxR family |
| 845 | 896 | InterPro | IPR000792 | Transcription regulator LuxR, C-terminal |
| 841 | 898 | SMART | SM00421 | luxrmega5 |
| 841 | 898 | InterPro | IPR000792 | Transcription regulator LuxR, C-terminal |
| 858 | 885 | ProSitePatterns | PS00622 | LuxR-type HTH domain signature. |
| 858 | 885 | InterPro | IPR000792 | Transcription regulator LuxR, C-terminal |
| 32 | 182 | Gene3D | G3DSA:3.40.50.300 | - |
| 32 | 182 | InterPro | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
3D Structure
Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.
Loading 3D structure...
Legend
High
Medium
Low
Structural evidence
0 + 1Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.
| Entry | Method | Resolution | Chain | Coverage | Links | Status |
|---|---|---|---|---|---|---|
|
AlphaFold
PA1760
|
AlphaFold | — | — | full sequence | — | Viewing |
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer
Pockets (FPOCKET)
Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).
| FPOCKET | Sticks | Spheres | Surfaces | Druggability | Labels | Zoom | Positions |
|---|---|---|---|---|---|---|---|
| 1 | 0.837 |
Ligand evidence
Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.
60 records
Highest-confidence structural evidence: ligands co-crystallized with this exact protein. If the source PDB is loaded in TPW, use Open crystal to inspect it in the structure viewer.
No PDB structure with a co-crystallized ligand found for this exact protein.
Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.
| Ligand | Source crystal | UniProt (homolog) | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|---|
| BEZ | P06993 | 122.1 Da LogP 1.38 TPSA 37.3 | ✓ Ro5 | ✓ Clean |
c1ccc(cc1)C(=O)O
|
|
| HL0 | D3W065 | 255.4 Da LogP 2.56 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCC(=O)N[C@H]1CCOC1=O
|
|
| HL6 | D3W065 | 199.2 Da LogP 1.00 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCC(=O)N[C@H]1CCOC1=O
|
|
| HLC | D3W065 | 297.7 Da LogP 1.93 TPSA 64.6 | ✓ Ro5 | ✓ Clean |
c1cc(ccc1OCCCC(=O)N[C@H]2CCOC2=O)Cl
|
|
| HTF | D3W065 | 227.3 Da LogP 1.78 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCC(=O)N[C@H]1CCOC1=O
|
Experimental bioactivity from ChEMBL measured directly on this protein. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
No ChEMBL bioactivity data found for this exact protein.
Bioactivity inferred from similar proteins in ChEMBL. Score = pchembl (−log Ki/IC₅₀; higher = more potent).
| Ligand | UniProt (homolog) | pchembl | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|---|
| CHEMBL1823953 | D3W065 | 6.42 | 297.7 Da LogP 1.93 TPSA 64.6 | ✓ Ro5 | ✓ Clean |
O=C(CCCOc1ccc(Cl)cc1)NC1CCOC1=O
|
| CHEMBL3740822 | D3W065 | — | 172.2 Da LogP 0.27 TPSA 58.6 | ✓ Ro5 | ✓ Clean |
CCCC(=O)NN1CCOC1=O
|
| CHEMBL3742268 | D3W065 | — | 298.4 Da LogP 2.57 TPSA 75.7 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCC(=O)CC(=O)NN1CCOC1=O
|
| HL4 | D3W065 | — | 171.2 Da LogP 0.22 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCC(=O)N[C@H]1CCOC1=O
|
| OHN | D3W065 | — | 297.4 Da LogP 2.52 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
Proposed virtual-screening candidates from ZINC. Score = Tanimoto similarity to a known binder (0–1; higher = more similar).
| Ligand | Tanimoto | MW · LogP · TPSA | Lipinski | PAINS | SMILES |
|---|---|---|---|---|---|
| ZINC100648301 | 1.000 | 311.5 Da LogP 4.12 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCC(=O)N[C@@H]1CCOC1=O
|
| ZINC103679989 | 1.000 | 269.4 Da LogP 2.95 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCC(=O)N[C@@H]1CCOC1=O
|
| ZINC13350890 | 1.000 | 213.3 Da LogP 1.39 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCC(=O)N[C@@H]1CCOC1=O
|
| ZINC136677465 | 1.000 | 241.3 Da LogP 2.17 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCC(=O)N[C@@H]1CCOC1=O
|
| ZINC136926241 | 1.000 | 297.4 Da LogP 3.73 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCC(=O)N[C@@H]1CCOC1=O
|
| ZINC4102234 | 1.000 | 213.3 Da LogP 1.39 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC42764482 | 1.000 | 283.4 Da LogP 3.34 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC42764633 | 1.000 | 255.4 Da LogP 2.56 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC42764884 | 1.000 | 269.4 Da LogP 2.95 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC43617550 | 1.000 | 227.3 Da LogP 1.78 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC62235613 | 1.000 | 227.3 Da LogP 1.78 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCC(=O)N[C@@H]1CCOC1=O
|
| ZINC64633540 | 1.000 | 283.4 Da LogP 3.34 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCC(=O)N[C@@H]1CCOC1=O
|
| ZINC64857746 | 1.000 | 339.5 Da LogP 4.90 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC64857785 | 1.000 | 297.4 Da LogP 3.73 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC64857786 | 1.000 | 325.5 Da LogP 4.51 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC64857990 | 1.000 | 241.3 Da LogP 2.17 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC64859360 | 1.000 | 311.5 Da LogP 4.12 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC64859363 | 1.000 | 255.4 Da LogP 2.56 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCC(=O)N[C@@H]1CCOC1=O
|
| ZINC85891448 | 1.000 | 339.5 Da LogP 4.90 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCCCC(=O)N[C@@H]1CCOC1=O
|
| ZINC64859423 | 0.872 | 337.5 Da LogP 4.68 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCCCC/C=C\CCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC27647307 | 0.825 | 309.5 Da LogP 3.90 TPSA 55.4 | ✓ Ro5 | ✓ Clean |
CCCC/C=C\CCCCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC3269660 | 0.824 | 254.2 Da LogP 2.45 TPSA 71.4 | ✓ Ro5 | Alert |
O=C(O)c1ccc(C(=O)C(=O)c2ccccc2)cc1
|
| ZINC135816904 | 0.821 | 269.3 Da LogP 1.74 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCC(=O)CC(=O)N[C@@H]1CCOC1=O
|
| ZINC137084200 | 0.821 | 353.5 Da LogP 4.08 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCC(=O)CC(=O)N[C@@H]1CCOC1=O
|
| ZINC137084239 | 0.821 | 353.5 Da LogP 4.08 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC38146039 | 0.821 | 283.4 Da LogP 2.13 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC38146043 | 0.821 | 325.4 Da LogP 3.30 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC42764477 | 0.821 | 269.3 Da LogP 1.74 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC42804658 | 0.821 | 325.4 Da LogP 3.30 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCCCC(=O)CC(=O)N[C@@H]1CCOC1=O
|
| ZINC45789166 | 0.821 | 255.3 Da LogP 1.35 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCC(=O)CCC(=O)N[C@H]1CCOC1=O
|
| ZINC8436849 | 0.821 | 297.4 Da LogP 2.52 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCC(=O)CC(=O)N[C@@H]1CCOC1=O
|
| ZINC8436851 | 0.821 | 297.4 Da LogP 2.52 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCCCCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC57382 | 0.800 | 213.2 Da LogP 0.18 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC6220 | 0.800 | 213.2 Da LogP 0.18 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCC(=O)CC(=O)N[C@@H]1CCOC1=O
|
| ZINC4102231 | 0.795 | 241.3 Da LogP 0.96 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC6397039 | 0.795 | 241.3 Da LogP 0.96 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCC(=O)CC(=O)N[C@@H]1CCOC1=O
|
| ZINC2504355 | 0.778 | 226.2 Da LogP 2.62 TPSA 54.4 | ✓ Ro5 | ✓ Clean |
O=C(O)c1ccc(C(=O)c2ccccc2)cc1
|
| ZINC64859369 | 0.750 | 351.5 Da LogP 3.85 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCC/C=C\CCCCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC83811844 | 0.737 | 229.2 Da LogP 0.06 TPSA 92.7 | ✓ Ro5 | ✓ Clean |
O=C(O)CCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC100165428 | 0.711 | 323.4 Da LogP 3.07 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCC/C=C/CCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC42764670 | 0.711 | 323.4 Da LogP 3.07 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCCCC/C=C\CCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC95704995 | 0.711 | 351.5 Da LogP 3.85 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
CCCC/C=C\CCCCCCCC(=O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC59124892 | 0.700 | 213.2 Da LogP 0.18 TPSA 72.5 | ✓ Ro5 | ✓ Clean |
O=CCCCCC(=O)N[C@H]1CCOC1=O
|
| ZINC1672966 | 0.688 | 210.2 Da LogP 2.75 TPSA 34.1 | ✓ Ro5 | Alert |
O=C(C(=O)c1ccccc1)c1ccccc1
|
| ZINC34057267 | 0.684 | 274.3 Da LogP 4.72 TPSA 37.3 | ✓ Ro5 | ✓ Clean |
O=C(O)c1ccc(-c2ccc(-c3ccccc3)cc2)cc1
|
| ZINC100295683 | 0.682 | 271.4 Da LogP 1.53 TPSA 75.6 | ✓ Ro5 | ✓ Clean |
CCCCCCC[C@H](O)CC(=O)N[C@H]1CCOC1=O
|
| ZINC101239737 | 0.682 | 299.4 Da LogP 2.31 TPSA 75.6 | ✓ Ro5 | ✓ Clean |
CCCCCCCCC[C@H](O)CC(=O)N[C@@H]1CCOC1=O
|
| ZINC101239738 | 0.682 | 299.4 Da LogP 2.31 TPSA 75.6 | ✓ Ro5 | ✓ Clean |
CCCCCCCCC[C@@H](O)CC(=O)N[C@@H]1CCOC1=O
|
| ZINC103636972 | 0.682 | 271.4 Da LogP 1.53 TPSA 75.6 | ✓ Ro5 | ✓ Clean |
CCCCCCC[C@@H](O)CC(=O)N[C@@H]1CCOC1=O
|
| ZINC42764622 | 0.682 | 299.4 Da LogP 2.31 TPSA 75.6 | ✓ Ro5 | ✓ Clean |
CCCCCCCCC[C@@H](O)CC(=O)N[C@H]1CCOC1=O
|
PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.