Protein profile

PA1794

glutamine--tRNA ligase

Genome: NC_002516.2

Gene: PA1794 glnS Structure source: Experimental + AlphaFold UniProt Q9I2U8
Amino acids 556
Annotations 12
Features 36
PDB binders 10
Druggability 0.408

Overview

Basic information about this protein and its source genome.

Accession
PA1794
Gene
PA1794 glnS
Status
annotated
Amino acids
556
Structure source
Experimental + AlphaFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
70.0
Human E-value
1.32e-06
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.408
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

1 EC 11 GO

Enzyme Commission (EC)

1

Gene Ontology (GO)

11
  • GO:0005829 The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
  • GO:0005524 Binding to ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
  • GO:0004819 Catalysis of the reaction: ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln).
  • GO:0006425 The process of coupling glutamine to glutaminyl-tRNA, catalyzed by glutaminyl-tRNA synthetase. The glutaminyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a glutamine-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.
  • GO:0006424 The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. The glutamyl-tRNA synthetase is a class-I synthetase. The activated amino acid is transferred to the 2'-OH group of a glutamic acid-accetping tRNA. The 2'-O-aminoacyl-tRNA will ultimately migrate to the 3' position via transesterification.
  • GO:0005737 The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
  • GO:0000166 Binding to a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
  • GO:0006412 The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
  • GO:0004812 Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
  • GO:0006418 The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis.
  • GO:0043039 The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.

Sequence Features

Domain/signature hits from InterPro and related databases.

36 records
Show feature table
Start End DB Term Name
464 551 Gene3D G3DSA:2.40.240.10 Ribosomal Protein L25; Chain P
464 551 InterPro IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal
30 553 NCBIfam TIGR00440 glutamine--tRNA ligase
30 553 InterPro IPR004514 Glutamine-tRNA synthetase
28 343 CDD cd00807 GlnRS_core
262 340 Gene3D G3DSA:1.10.1160.10 -
262 340 InterPro IPR020061 Glutamine-tRNA ligase, alpha-bundle domain superfamily
46 57 PRINTS PR00987 Glutamyl-tRNA synthetase signature
46 57 InterPro IPR000924 Glutamyl/glutaminyl-tRNA synthetase
61 74 PRINTS PR00987 Glutamyl-tRNA synthetase signature
61 74 InterPro IPR000924 Glutamyl/glutaminyl-tRNA synthetase
32 44 PRINTS PR00987 Glutamyl-tRNA synthetase signature
32 44 InterPro IPR000924 Glutamyl/glutaminyl-tRNA synthetase
211 221 PRINTS PR00987 Glutamyl-tRNA synthetase signature
211 221 InterPro IPR000924 Glutamyl/glutaminyl-tRNA synthetase
349 463 Gene3D G3DSA:2.40.240.10 Ribosomal Protein L25; Chain P
349 463 InterPro IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal
102 210 FunFam G3DSA:3.90.800.10:FF:000001 Glutamine--tRNA ligase
28 321 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain
28 321 InterPro IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain
262 339 FunFam G3DSA:1.10.1160.10:FF:000001 Glutamine--tRNA ligase
337 462 FunFam G3DSA:2.40.240.10:FF:000001 Glutamine--tRNA ligase
1 344 FunFam G3DSA:3.40.50.620:FF:000037 Glutamine--tRNA ligase cytoplasmic
1 553 Hamap MF_00126 Glutamine--tRNA ligase [glnS].
1 553 InterPro IPR022861 Glutamine-tRNA ligase, bacterial
35 46 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature.
35 46 InterPro IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site
22 552 PANTHER PTHR43097 GLUTAMINE-TRNA LIGASE
341 552 SUPERFAMILY SSF50715 Ribosomal protein L25-like
341 552 InterPro IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily
102 210 Gene3D G3DSA:3.90.800.10 -
29 249 Gene3D G3DSA:3.40.50.620 HUPs
29 249 InterPro IPR014729 Rossmann-like alpha/beta/alpha sandwich fold
28 347 SUPERFAMILY SSF52374 Nucleotidylyl transferase
341 532 Pfam PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain
341 532 InterPro IPR020059 Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

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Structural evidence

1 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
PDB 5BNZ
X-ray 1.90 Å A,B
100.0% 1-556
Viewing
AlphaFold PA1794
AlphaFold full sequence Loaded
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
2 0.408

Pockets (P2RANK)

Showing top-ranked P2Rank candidates by probability. Probability is color-coded per P2Rank calibration: high (≥ 0.5), medium (0.2 – 0.49), low (< 0.2).

P2RANK Sticks Spheres Surfaces Score Probability Labels Zoom Positions
1 27.87 0.923
2 5.76 0.28
3 4.49 0.191
4 4.05 0.162
5 1.75 0.032

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

64 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
8X1 P07814 429.4 Da LogP -3.23 TPSA 203.8 1 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
91Y P07814 364.4 Da LogP 2.89 TPSA 84.0 ✓ Ro5 ✓ Clean c1ccc2c(c1)CC(C2)NC(=O)c3c(nccn3)NC(=O)C4CCCCC4
ADN P07814 267.2 Da LogP -1.98 TPSA 139.5 ✓ Ro5 ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
ANP P07814 506.2 Da LogP -2.06 TPSA 281.9 3 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
DTT P13188 154.3 Da LogP -0.43 TPSA 40.5 ✓ Ro5 ✓ Clean C([C@@H]([C@H](CS)O)O)S
GAU P27000 133.1 Da LogP -0.83 TPSA 83.5 ✓ Ro5 ✓ Clean C(CC(=O)O)[C@@H](CO)N
GOM P27000 461.3 Da LogP -4.33 TPSA 245.7 1 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
GSU P27000 475.4 Da LogP -3.40 TPSA 255.1 2 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…
HFG P07814 414.7 Da LogP 1.88 TPSA 84.2 ✓ Ro5 ✓ Clean c1c2c(cc(c1Cl)Br)N=CN(C2=O)CC(=O)C[C@@H]3[C@H](…
QSI P00962 474.5 Da LogP -4.00 TPSA 260.9 2 viol. ✓ Clean c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.