Protein profile

PA1801

ATP-dependent Clp protease proteolytic subunit

Genome: NC_002516.2

Gene: clpP Structure source: ColabFold
Amino acids 213
Annotations 3
Features 28
PDB binders 5
Druggability 0.869

Overview

Basic information about this protein and its source genome.

Accession
PA1801
Gene
clpP
Status
annotated
Amino acids
213
Structure source
ColabFold

Target profile

Computed evidence for target prioritization.

Human off-target
hit
Human identity (%)
61.538
Human E-value
1.06e-16
Gut microbiome off-target
hit
Essential (DEG)
Y
Localization
Cytoplasmic

Selected Druggability evidence

Selected Druggability is the FPocket score chosen for ranking using the curated structure priority. The 3D viewer may show a different loaded structure, so its visible pockets can differ.

FPocket 0.869
Structure
Pocket

Sequence

Primary amino-acid sequence viewer.

Functional Annotations

Enzyme classification and Gene Ontology terms linked to this protein.

3 GO

Gene Ontology (GO)

3
  • GO:0004176 Catalysis of the hydrolysis of peptide bonds, driven by ATP hydrolysis.
  • GO:0006508 The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
  • GO:0004252 Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).

Sequence Features

Domain/signature hits from InterPro and related databases.

28 records
Show feature table
Start End DB Term Name
128 141 ProSitePatterns PS00382 Endopeptidase Clp histidine active site.
128 141 InterPro IPR033135 ClpP, histidine active site
29 208 Pfam PF00574 Clp protease
29 208 InterPro IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA
106 117 ProSitePatterns PS00381 Endopeptidase Clp serine active site.
106 117 InterPro IPR018215 ClpP, Ser active site
35 205 CDD cd07017 S14_ClpP_2
35 205 InterPro IPR001907 ATP-dependent Clp protease proteolytic subunit
12 212 Gene3D G3DSA:3.90.226.10 -
27 210 SUPERFAMILY SSF52096 ClpP/crotonase
27 210 InterPro IPR029045 ClpP/crotonase-like domain superfamily
18 210 FunFam G3DSA:3.90.226.10:FF:000001 ATP-dependent Clp protease proteolytic subunit
19 207 NCBIfam TIGR00493 ATP-dependent Clp endopeptidase proteolytic subunit ClpP
19 207 InterPro IPR001907 ATP-dependent Clp protease proteolytic subunit
35 50 PRINTS PR00127 Clp protease catalytic subunit P signature
35 50 InterPro IPR001907 ATP-dependent Clp protease proteolytic subunit
75 95 PRINTS PR00127 Clp protease catalytic subunit P signature
75 95 InterPro IPR001907 ATP-dependent Clp protease proteolytic subunit
127 146 PRINTS PR00127 Clp protease catalytic subunit P signature
127 146 InterPro IPR001907 ATP-dependent Clp protease proteolytic subunit
184 203 PRINTS PR00127 Clp protease catalytic subunit P signature
184 203 InterPro IPR001907 ATP-dependent Clp protease proteolytic subunit
106 123 PRINTS PR00127 Clp protease catalytic subunit P signature
106 123 InterPro IPR001907 ATP-dependent Clp protease proteolytic subunit
19 209 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP].
19 209 InterPro IPR001907 ATP-dependent Clp protease proteolytic subunit
18 209 PANTHER PTHR10381 ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT
18 209 InterPro IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA

3D Structure

Selected loaded structure. Experimental PDB entries may cover only a portion of the sequence; predicted models typically cover the full protein.

3D visualization script Full viewer

Loading 3D structure...

Legend High Medium Low

Structural evidence

0 + 1

Experimental PDB entries and predicted models. Click Switch to display a different structure in the viewer.

Entry Method Resolution Chain Coverage Links Status
ColabFold PA1801
ColabFold full sequence Viewing
Pocket details FPocket · P2Rank — toggle visibility and zoom from here, or open full viewer

Pockets (FPOCKET)

Showing top-ranked FPocket candidates by druggability. Druggability is color-coded: high (0.7 or higher), medium (0.4 to 0.69), low (below 0.4).

FPOCKET Sticks Spheres Surfaces Druggability Labels Zoom Positions
1 0.869
3 0.355

Ligand evidence

Ligands grouped by evidence source. PDB ligands keep the source crystal visible, and loaded crystals can be opened directly in the structure viewer.

155 records

Structural evidence inferred from similar proteins. The source crystal indicates where the ligand was observed; the UniProt column identifies the homologous protein carrying that ligand.

Show only:
Ligand Source crystal UniProt (homolog) MW · LogP · TPSA Lipinski PAINS SMILES
CMQ P0A6G7 428.5 Da LogP 3.14 TPSA 107.9 ✓ Ro5 ✓ Clean CC(C)C[C@@H](C(=O)N[C@@H](Cc1ccc(cc1)O)[C@H](C)…
E4U Q2YSF8 490.2 Da LogP 3.36 TPSA 114.5 ✓ Ro5 ✓ Clean B([C@H](CC(C)C)NC(=O)[C@H](Cc1c[nH]c2c1cccc2)NC…
FN3 Q2YSF8 384.2 Da LogP 0.36 TPSA 124.4 ✓ Ro5 ✓ Clean B([C@@H](CC(C)C)NC(=O)[C@H](Cc1ccccc1)NC(=O)c2c…
KHS P0A6G7 466.9 Da LogP 4.21 TPSA 76.1 ✓ Ro5 ✓ Clean CC(C)(C(=O)NCCSc1ccccc1Cl)S(=O)(=O)c2ccc(cn2)C(…
NWT Q2G036 770.9 Da LogP 1.89 TPSA 174.5 1 viol. ✓ Clean CCCC/C=C/C(=O)N[C@@H](Cc1cc(cc(c1)F)F)C(=O)N[C@…

PDB and ChEMBL records on this protein are shown in full. ChEMBL records from similar proteins are capped at the top 100 per protein (by pchembl) and ZINC at the top 50 (Tanimoto ≥ 0.5). ADME columns are descriptor-based screening flags, not experimental toxicity results.